PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC009842.30
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family FAR1
Protein Properties Length: 549aa    MW: 62247.8 Da    PI: 6.0426
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC009842.30genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR151.43.6e-1662136290
          FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                   fY+eYA++ GF+ ++  s++sk  g i+ r+fvC++ g ++++ ++              C a+++++++ + kw++tk+++eHnH+++
  EcC009842.30  62 FYDEYARREGFTSKVGPSSQSKLGGVIVAREFVCTRDGLKRKSVDS--------------CSAMIRIELKGQFKWVLTKFVKEHNHAMV 136
                   9***************************************999887..............**************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.2E-1262136IPR004330FAR1 DNA binding domain
PfamPF105511.4E-27269362IPR018289MULE transposase domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016787Molecular Functionhydrolase activity
Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    Send to blast
MEVGVIEVQD GVGHAGGVDE ANVETNEADH SNVENSTVHV ENGMGEPHVG MEFDSEEAAK  60
TFYDEYARRE GFTSKVGPSS QSKLGGVIVA REFVCTRDGL KRKSVDSCSA MIRIELKGQF  120
KWVLTKFVKE HNHAMVSPSK VHHLRPRRHF AGATKNMADN LRGATVVPSG VMYVSMDGNR  180
EVNHGSTSSP SESNRPVKNA GTANYVVKPS SQKRTLGRDA QNLLDYFKKM QAENPGFFYA  240
IQLDEENCMG NVFWADARSR SAYSHFGDVV SLDTMYRVYQ YRVPFAPFTG VNHHGQTILF  300
GCALLLDDSE ASFIWLFKTF LTAMGDRAPI SIITDQDRVI QAAVSKVFPG ARHCISKWHV  360
LREGQEKLAH VCHAHPNFQV ELYNCINMTE TIDEFESSWN SILEKYDLRR NDWLQSIYNA  420
RAQWVPVYFR DSFFGAISPN QGIDSAFFDE YVNQQTTLPM FFRQYERAFE NWFEKEIEAD  480
FDTICTAPVL RTPSPMEQQA ANLYTRKVFA KFQEELVETF VYTANRIEGD GMTSTFRVAK  540
FEDDSKAYI
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018724770.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 3
RefseqXP_018724771.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 3
SwissprotQ9ZVC90.0FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBLA0A2N9FLY70.0A0A2N9FLY7_FAGSY; Uncharacterized protein
STRINGXP_010045140.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11826253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.20.0FAR1-related sequence 3
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]