PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC009869.40
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 354aa    MW: 39931.8 Da    PI: 6.2357
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC009869.40genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.92.3e-181966148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +l ++++++G g+W++ +r  g++R++k+c++rw +yl
     EcC009869.40 19 KGPWTPEEDRKLMEYIERHGHGSWRSLPRLAGLNRCGKSCRLRWINYL 66
                     79********************************************97 PP
2Myb_DNA-binding49.97.2e-1672117148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T eE + ++++++ +G++ W++Ia +++ gRt++++k+ w+++l
     EcC009869.40  72 RGNFTDEEKQMIINLHAVYGNK-WSAIATHLP-GRTDNEIKNLWNTHL 117
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.3691466IPR017930Myb domain
SuperFamilySSF466895.62E-3216113IPR009057Homeodomain-like
SMARTSM007171.6E-141868IPR001005SANT/Myb domain
PfamPF002494.8E-171966IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-252073IPR009057Homeodomain-like
CDDcd001672.85E-112166No hitNo description
PROSITE profilePS5129425.83167121IPR017930Myb domain
SMARTSM007178.4E-1571119IPR001005SANT/Myb domain
PfamPF002492.2E-1472117IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-2774121IPR009057Homeodomain-like
CDDcd001672.85E-1174117No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006364Biological ProcessrRNA processing
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0009880Biological Processembryonic pattern specification
GO:0051301Biological Processcell division
GO:0005730Cellular Componentnucleolus
GO:0032040Cellular Componentsmall-subunit processome
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MQSEVPMESE ELNGSSLKKG PWTPEEDRKL MEYIERHGHG SWRSLPRLAG LNRCGKSCRL  60
RWINYLRPDI KRGNFTDEEK QMIINLHAVY GNKWSAIATH LPGRTDNEIK NLWNTHLKKK  120
LLQMGIDPMT HQPRADLNIF SNLQQLLTLA NLLNSNNQLA SPLEINNAMR TLHFQSDSTL  180
LARIQLLSQV FGATGNCNPP PANNIDALLM NLVGSSSSLS SGHEHRLEDY LKNNRITNEY  240
SDRFGAGDGL VPSGAFSAST SFEVKEPQLP CNSMLNTGDY PMPFENSIPP LVCASPGHRV  300
SSISEMEKSK MYENSSSTST TTFDRLELEA NNWGDHHQFM DDEVSDSFWN ELIR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-28171215108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250|UniProtKB:Q9M2D9}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by gravity in roots. {ECO:0000269|PubMed:24902892}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010034937.20.0PREDICTED: transcription factor MYB3
SwissprotQ9SBF31e-76MYB92_ARATH; Transcription factor MYB92
TrEMBLA0A058ZXS30.0A0A058ZXS3_EUCGR; Uncharacterized protein
STRINGXP_010034937.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02940.11e-76myb domain protein 107
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]