PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC010129.30
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family CPP
Protein Properties Length: 136aa    MW: 15390.4 Da    PI: 8.1266
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC010129.30genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR20.97.2e-071241740
           TCR 17 YCeCfaagkkCseeCkCedCkNke 40
                  YCeCfaa+ +C+++C+C  C N++
  EcC010129.30  1 YCECFAAELFCTDSCTCGFCYNNR 24
                  **********************97 PP
2TCR48.61.6e-1571108138
           TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkN 38 
                   ++k+gCnCkks+Clk+YCeC++ ++ C +eC+C dC+N
  EcC010129.30  71 RHKRGCNCKKSQCLKNYCECYQGKAGCFHECNCRDCSN 108
                   589**********************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036384.0E-4123IPR005172CRC domain
PROSITE profilePS5163426.9351111IPR005172CRC domain
SMARTSM011147.3E-1471112IPR033467Tesmin/TSO1-like CXC domain
PfamPF036386.6E-1173108IPR005172CRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005975Biological Processcarbohydrate metabolic process
GO:0004553Molecular Functionhydrolase activity, hydrolyzing O-glycosyl compounds
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
YCECFAAELF CTDSCTCGFC YNNRDMEDSV YKAKELIKLH NPLAFGPKVV RHPESGGRVG  60
GRSEDTPSFV RHKRGCNCKK SQCLKNYCEC YQGKAGCFHE CNCRDCSNPF GPKSGERHTC  120
GYYSDRSSYR LLTFSP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A2e-11112525135Protein lin-54 homolog
5fd3_B2e-11112525135Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018717839.16e-68PREDICTED: protein tesmin/TSO1-like CXC 2
SwissprotF4JIF52e-33TCX2_ARATH; Protein tesmin/TSO1-like CXC 2
TrEMBLA0A2C9UCH45e-33A0A2C9UCH4_MANES; Uncharacterized protein
TrEMBLA0A2I4EGY25e-33A0A2I4EGY2_JUGRE; protein tesmin/TSO1-like CXC 2 isoform X4
TrEMBLA0A2K3LG932e-33A0A2K3LG93_TRIPR; Tesmin/TSO1-like CXC domain protein (Fragment)
TrEMBLA0A392M9324e-33A0A392M932_9FABA; Tesmin/TSO1-like CXC domain protein (Fragment)
STRINGXP_010030274.16e-67(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15696813
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.11e-35TESMIN/TSO1-like CXC 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]