PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC010357.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 259aa    MW: 29332.2 Da    PI: 9.8612
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC010357.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1645.5e-51141391128
           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 
                   lppGfrFhPtdeelvv+yLk+kv + +l++ ++i+evd++k++PwdLp      e+e yfFs+r+ ky++g+r+nrat sgyWkatg d++v+s+++
  EcC010357.20  14 LPPGFRFHPTDEELVVQYLKRKVFACPLPA-SFIPEVDVCKADPWDLPG---DAEQERYFFSTREAKYPNGNRSNRATVSGYWKATGIDRRVVSSRS 106
                   79****************************.89***************3...457899************************************955 PP

           NAM  98 el..vglkktLvfykgrapkgektdWvmheyrl 128
                   ++   glkktLvfy+g+ap+g+ktdW+mheyrl
  EcC010357.20 107 HQlvLGLKKTLVFYRGKAPHGSKTDWIMHEYRL 139
                   44449**************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-589174IPR003441NAC domain
PROSITE profilePS5100556.6514174IPR003441NAC domain
PfamPF023653.4E-2615139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010089Biological Processxylem development
GO:0010150Biological Processleaf senescence
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MEKVSFVKNG VLRLPPGFRF HPTDEELVVQ YLKRKVFACP LPASFIPEVD VCKADPWDLP  60
GDAEQERYFF STREAKYPNG NRSNRATVSG YWKATGIDRR VVSSRSHQLV LGLKKTLVFY  120
RGKAPHGSKT DWIMHEYRLV DGLAPGTALP PKMNLNQSPE VPRENWVLCR IFFKRRSTKN  180
DGHNHNIESF RTTNEVSKVR GNGPVFYDFM ARHKTDLNLT PCTSSSGSSG VTELSLRGGP  240
EEHEESSSCN SFSLSRRIP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-501218015171NO APICAL MERISTEM PROTEIN
1ut4_B5e-501218015171NO APICAL MERISTEM PROTEIN
1ut7_A5e-501218015171NO APICAL MERISTEM PROTEIN
1ut7_B5e-501218015171NO APICAL MERISTEM PROTEIN
3swm_A6e-501218018174NAC domain-containing protein 19
3swm_B6e-501218018174NAC domain-containing protein 19
3swm_C6e-501218018174NAC domain-containing protein 19
3swm_D6e-501218018174NAC domain-containing protein 19
3swp_A6e-501218018174NAC domain-containing protein 19
3swp_B6e-501218018174NAC domain-containing protein 19
3swp_C6e-501218018174NAC domain-containing protein 19
3swp_D6e-501218018174NAC domain-containing protein 19
4dul_A5e-501218015171NAC domain-containing protein 19
4dul_B5e-501218015171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00507DAPTransfer from AT5G13180Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010024206.10.0PREDICTED: NAC domain-containing protein 83
SwissprotQ9FY931e-94NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A059B3480.0A0A059B348_EUCGR; Uncharacterized protein
STRINGXP_010024206.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18062786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.12e-93NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]