PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC011684.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

C2H2

Protein Properties

Length: 242aa MW: 25674.3 Da PI: 9.6349

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC011684.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.2	0.00027	63	85	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 C+ Cg++F+ ++++ H+ + H EcC011684.10 63 ACSQCGEVFPKLESMELHQAVrH 85 6******************9888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	62	85	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	1.25E-15	87	242	No hit	No description
Gene3D	G3DSA:3.90.228.10	1.3E-5	89	242	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence Send to blast
LLSRKGGAGS SSSRSLGGST RSHGGGGGSS RGMQFRKLSG CYECHMIVDP SRYPLTPRST 60 ICACSQCGEV FPKLESMELH QAVRHAVSEL GPEDSGRHIV EIIFKSSWLK KDNPICKIER 120 ILKVHTTQRT IQRFEDCRDA VKTRALASAR RNPRCAADGN ELLRFHCTTL ACALGSGGST 180 SLCGSVPGCG VCTVIRHGFH AKSQGGGGGG VCTTASSGRA HDSLRCADGR RAMLVCRVIA 240 GR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010061047.1	1e-143	PREDICTED: uncharacterized protein LOC104448832
TrEMBL	A0A059BQ15	1e-141	A0A059BQ15_EUCGR; Uncharacterized protein
STRING	XP_010061047.1	1e-143	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1916	28	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	1e-105	C2H2-like zinc finger protein