PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC011699.60

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

NAC

Protein Properties

Length: 238aa MW: 27238.1 Da PI: 8.5958

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC011699.60	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	167	6.3e-52	9	136	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.k 96 lppGfrFhPtdeel+ +yL+kk+++++l++ ++i+evd+yk++Pw+Lp k++ +e+ewyfFs+rd+ky++g r+nr+++sgyWkatg+dk +l++ + EcC011699.60 9 LPPGFRFHPTDEELILHYLRKKMTSTPLPV-SIIAEVDLYKFDPWELPGKATFGETEWYFFSPRDRKYPNGARPNRSAASGYWKATGTDKIILDSsT 104 79**************************.89***********8888999**********************************9878 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 g++ g+kk Lvfy+g+ pkg k++W+mheyrl EcC011699.60 105 GKNLGVKKALVFYQGKPPKGIKSQWIMHEYRL 136 899*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.88E-63	5	169	IPR003441	NAC domain
PROSITE profile	PS51005	61.241	9	169	IPR003441	NAC domain
Pfam	PF02365	1.9E-27	10	136	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003333	Biological Process	amino acid transmembrane transport
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0045454	Biological Process	cell redox homeostasis
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
MKNCLQPNLP PGFRFHPTDE ELILHYLRKK MTSTPLPVSI IAEVDLYKFD PWELPGKATF 60 GETEWYFFSP RDRKYPNGAR PNRSAASGYW KATGTDKIIL DSSTGKNLGV KKALVFYQGK 120 PPKGIKSQWI MHEYRLANSP VPIYSDKAIK LKELSMRLDE WVLCRIYKRS SAAYSITPMA 180 TASDDPEEEQ RLTREDINND NSTVDAIRPM MMMNGSSSFS NLFDAVDFSM LRNFLSDD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	1e-71	6	173	17	172	NAC domain-containing protein 19
3swm_B	1e-71	6	173	17	172	NAC domain-containing protein 19
3swm_C	1e-71	6	173	17	172	NAC domain-containing protein 19
3swm_D	1e-71	6	173	17	172	NAC domain-containing protein 19
3swp_A	1e-71	6	173	17	172	NAC domain-containing protein 19
3swp_B	1e-71	6	173	17	172	NAC domain-containing protein 19
3swp_C	1e-71	6	173	17	172	NAC domain-containing protein 19
3swp_D	1e-71	6	173	17	172	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the promoter of ACO5, an ACC oxidase involved in ethylene biosynthesis. Mediates waterlogging-induced hyponastic leaf movement, and cell expansion in abaxial cells of the basal petiole region, by directly regulating the expression of ACO5 (PubMed:24363315). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269\|PubMed:18849494, ECO:0000269\|PubMed:24363315}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By root flooding (PubMed:24363315). Induced by senescence (PubMed:24659488). {ECO:0000269\|PubMed:24363315, ECO:0000269\|PubMed:24659488}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010036180.1	1e-179	PREDICTED: NAC transcription factor 29
Swissprot	Q84TD6	7e-93	NAC47_ARATH; NAC transcription factor 47
TrEMBL	A0A059A1V6	1e-178	A0A059A1V6_EUCGR; Uncharacterized protein
STRING	XP_010036180.1	1e-178	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04070.1	4e-90	NAC domain containing protein 47

Publications ? help Back to Top
Hofmann NR A NAC transcription factor for flooding: SHYG helps plants keep their leaves in the air. Plant Cell, 2013. 25(12): p. 4771 [PMID:24363314] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]