PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC011826.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 246aa    MW: 27293.6 Da    PI: 4.6197
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC011826.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS121.41.1e-371282462126
          GRAS   2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                    +lLlecA a+s ++l +a+++L +l ++asp+g +  +R++ayf++A+++r+ +s+ +++   p  + +     ++ +a+++f+ vsP++kf+h+t
  EcC011826.10 128 LTLLLECAVAISVDNLGEAHRMLLELTQMASPYGpSCAERIVAYFAKAMSSRVINSWLGICL--PLVDYK-----SVHSAFQVFNTVSPFVKFAHFT 217
                   579*******************************9999*********************994..444443.....456899**************** PP

          GRAS  98 aNqaIleavegeervHiiDfdisqGlQWp 126
                    NqaIlea+++ +rvHi+D+di+qGlQWp
  EcC011826.10 218 SNQAILEAFHRRDRVHIVDLDIMQGLQWP 246
                   ****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098526.029101246IPR005202Transcription factor GRAS
PfamPF035143.9E-35128246IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MLEEGFEVVN RDLEMTPSLE LWDSSGFSDP ASGRCAGSER NELSEWVEQV TRQLIDDLPE  60
TPGGGADRGF HTDSEMASED SIPSILSDSR PRKALRWNAI HHHLEGNSDS VHWGNEASPS  120
ESNGLGLLTL LLECAVAISV DNLGEAHRML LELTQMASPY GPSCAERIVA YFAKAMSSRV  180
INSWLGICLP LVDYKSVHSA FQVFNTVSPF VKFAHFTSNQ AILEAFHRRD RVHIVDLDIM  240
QGLQWP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-4013324625144Protein SCARECROW
5b3h_A4e-4013324624143Protein SCARECROW
5b3h_D4e-4013324624143Protein SCARECROW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010037969.11e-159PREDICTED: protein SCARECROW-like
TrEMBLB9SV258e-97B9SV25_RICCO; DELLA protein GAIP, putative
STRINGXP_010037969.11e-158(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM160051115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.16e-41GRAS family protein