PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC011894.30
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 302aa    MW: 34981.8 Da    PI: 8.4123
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC011894.30genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.23.3e-063357223
                  EET..TTTEEESSHHHHHHHHHH.T CS
       zf-C2H2  2 kCp..dCgksFsrksnLkrHirt.H 23
                  +Cp  dC ksF  + n+krH++  H
  EcC011894.30 33 SCPvdDCEKSFAYQGNMKRHLNEmH 57
                  7********************9988 PP
2zf-C2H219.33.1e-067498123
                  EEET..TTTEEESSHHHHHHHHHHT CS
       zf-C2H2  1 ykCp..dCgksFsrksnLkrHirtH 23
                  ++Cp   Cgk+F+  s L++H  +H
  EcC011894.30 74 HVCPevGCGKVFKFASKLRKHEDSH 98
                  79*******************9888 PP
3zf-C2H214.50.0001143162523
                   TTTEEESSHHHHHHHHHH.T CS
       zf-C2H2   5 dCgksFsrksnLkrHirt.H 23 
                    C+k Fs+ ++Lk H+r+ H
  EcC011894.30 143 ECTKYFSNVDYLKDHMRSaH 162
                   6****************999 PP
4zf-C2H217.21.4e-05199222323
                   ET..TTTEEESSHHHHHHHHHH.T CS
       zf-C2H2   3 Cp..dCgksFsrksnLkrHirt.H 23 
                   C    C + Fs+ksnL++H +  H
  EcC011894.30 199 CDfeGCQRIFSTKSNLHQHVKAvH 222
                   77789**************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.4E-6129IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.933330IPR007087Zinc finger, C2H2
SMARTSM003551.5327IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280527IPR007087Zinc finger, C2H2
PROSITE profilePS5015712.2793262IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.3E-53258IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.42E-63258No hitNo description
SMARTSM003550.00223257IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803457IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.4E-67299IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.8687498IPR007087Zinc finger, C2H2
SMARTSM003550.00767498IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807698IPR007087Zinc finger, C2H2
SMARTSM0035520139162IPR015880Zinc finger, C2H2-like
SMARTSM0035578165186IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.47E-8179239No hitNo description
Gene3DG3DSA:3.30.160.609.8E-7197222IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.05197227IPR007087Zinc finger, C2H2
SMARTSM003550.007197222IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280199222IPR007087Zinc finger, C2H2
SMARTSM0035534228254IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280230254IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
RLFNCSIEDC SASYSRKDHL ACHFLQHKGK ILSCPVDDCE KSFAYQGNMK RHLNEMHNDE  60
EPSASGKCKS LKQHVCPEVG CGKVFKFASK LRKHEDSHGE SLNYEGVFVK PNDIYELFNM  120
LFDNNVISTA TVKLETVEAF YCECTKYFSN VDYLKDHMRS AHQLVNCNIC GTKQLRKNIQ  180
RHLCTHEKKN SADSRAFGCD FEGCQRIFST KSNLHQHVKA VHLEVRPFVC GHKDCGKKFA  240
YKHVRDHHEK TRCHVYTPGD FEELDEQFRS RPRGGRKRKC PTIDSLLRKR VTLPNELDFL  300
LD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1270278RPRGGRKRK
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010034379.11e-166PREDICTED: transcription factor IIIA
SwissprotQ84MZ44e-80TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A059DCN01e-165A0A059DCN0_EUCGR; Uncharacterized protein
STRINGXP_010034379.11e-166(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.14e-83transcription factor IIIA