PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC012410.30
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 242aa    MW: 27431.9 Da    PI: 9.003
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC012410.30genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.0003194116223
                   EETTTTEEESSHHHHHHHHHH.T CS
       zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                   +C+ C+++++++ +L  H +  H
  EcC012410.30  94 SCSVCSRVYPTSRLLSIHVSEaH 116
                   6*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.876691IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806891IPR007087Zinc finger, C2H2
SMARTSM003555.493116IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028095116IPR007087Zinc finger, C2H2
SMARTSM003550.18131156IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280133156IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006412Biological Processtranslation
GO:0005840Cellular Componentribosome
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MEAEGGGGGG GFPYWTSVRR RFDPDSAFFS SGNVERELLA KQVALDITED ERYQLQNLMD  60
EESRGVFCPI VGCGAHLTSL ENFEDHYNAR HTASCSVCSR VYPTSRLLSI HVSEAHDSFF  120
QAKVARGFAM YECLVESCGS KFKTYKARQR HLIDKHRFPI SFEFYKKALP SRKQRQKNQR  180
KQVTHKKEVA PSAMEVENEA VDELVSAVSK LSTSDSPTSI SFGRRHTRGL PFVPRAIQRE  240
RT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010028991.11e-180PREDICTED: zinc finger protein 511
TrEMBLA0A059APX21e-179A0A059APX2_EUCGR; Uncharacterized protein
STRINGXP_010028991.11e-180(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99712632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14140.11e-108zinc ion binding;nucleic acid binding;zinc ion binding