PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC012458.20

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

WRKY

Protein Properties

Length: 192aa MW: 21461.2 Da PI: 10.2296

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC012458.20	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	106.7	1.1e-33	113	171	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+++fprsYYrCt++gC+vkk+v+r ++d+ +v++tYeg+H+h+ EcC012458.20 113 LDDGYRWRKYGQKAVKNNRFPRSYYRCTHPGCNVKKQVQRLSKDEGMVVTTYEGTHTHP 171 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.9E-35	98	171	IPR003657	WRKY domain
SuperFamily	SSF118290	4.05E-30	105	172	IPR003657	WRKY domain
PROSITE profile	PS50811	29.78	108	173	IPR003657	WRKY domain
SMART	SM00774	1.0E-39	113	172	IPR003657	WRKY domain
Pfam	PF03106	1.9E-27	114	171	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence Send to blast
MERHQMLFPL SADVRPPPPQ PPLTSFPFAF EAGGSRVQSS TGFGSDLMSS SVHGFLGLSG 60 AEDGIAQRSK AEYDAAHGSS VSGGAEKIGK KKGEKKVRRP RIAFQTRSQV DILDDGYRWR 120 KYGQKAVKNN RFPRSYYRCT HPGCNVKKQV QRLSKDEGMV VTTYEGTHTH PIQKSTENFE 180 HILSQMQIYP PF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	2e-28	103	172	7	76	Probable WRKY transcription factor 4
2lex_A	2e-28	103	172	7	76	Probable WRKY transcription factor 4
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015869717.1	7e-69	probable WRKY transcription factor 75
Refseq	XP_015871944.1	7e-69	probable WRKY transcription factor 75
TrEMBL	A0A059AQ42	1e-106	A0A059AQ42_EUCGR; Uncharacterized protein
STRING	Gorai.001G273100.1	4e-68	(Gossypium raimondii)
STRING	XP_010250654.1	4e-68	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13080.1	2e-56	WRKY DNA-binding protein 75