PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC012625.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 172aa    MW: 19466.8 Da    PI: 9.6373
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC012625.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.74.8e-063555121
                  EEETTTTEEESSHHHHHHHHH CS
       zf-C2H2  1 ykCpdCgksFsrksnLkrHir 21
                  +kC+ Cg +F+ +s+L+ H+ 
  EcC012625.10 35 FKCEWCGATFNLSSELREHQA 55
                  89*****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.98E-52056No hitNo description
Gene3DG3DSA:3.30.160.604.1E-63556IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.5563566IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MPKTTQTCTY SSCEKKSMKD GLGHHTKATH RKARFKCEWC GATFNLSSEL REHQATSGYN  60
YCGSQAAKSA VNFGQPAGVE LGETEAAGLR EMNTDAAEEL DLLKTRSRQL LAEGVKKPRR  120
WAHVQVGRRC WGNLPRSQRE DGQGRVFGGS CRLTEGDKRR WTWTWQSRDH FD