PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC012707.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family HSF
Protein Properties Length: 393aa    MW: 44231 Da    PI: 4.4345
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC012707.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.55.9e-35181092102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k ye++ede+++ +i w + g++fv++d ++f+ ++Lp+yFkhsnf+SF+RQLn+YgF+kv++++         weF+++ F kg+k++l++i+
  EcC012707.10  18 FLSKCYEMVEDEATDPIIAWGSAGDTFVIWDITQFTLQLLPHYFKHSNFSSFMRQLNIYGFRKVDSDR---------WEFANDGFIKGQKHMLKNIR 105
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k+
  EcC012707.10 106 RRKN 109
                   **97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.5E-5114107IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.36E-3215107IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.109.6E-3516107IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000569.2E-181841IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.4E-2918107IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.2E-185668IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405781IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.2E-186981IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MVKPSGGGGD RGPPLAPFLS KCYEMVEDEA TDPIIAWGSA GDTFVIWDIT QFTLQLLPHY  60
FKHSNFSSFM RQLNIYGFRK VDSDRWEFAN DGFIKGQKHM LKNIRRRKNV QVVDQKKSLQ  120
KQDNSVEEVD KIKIDGLWKE VENLKIGKTA LSLELGKVRQ LQETLENKLV LLRDRVQGME  180
NNQQQMLSFL VMAMQNPGFL VQLVKLKDNH CRVTEMGNML EPQGAENGSW ISEGTIVKYQ  240
PPTDGKTNPE LSPLSGLGET PKPGPSFDGT RDVLMNNDLM SMLMNEKFSL DTPLIFPDSP  300
DDNAWEKLLL SCPFIESASE KRQDNEGPNY LGMETEPAFS GASSVSTDFE ALMRMMGNPQ  360
EAETESDVDG DDWEDAPNVD FLAEQLEYLA SKA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-23710717129Heat shock factor protein 1
5d5v_B4e-23710717129Heat shock factor protein 1
5d5v_D4e-23710717129Heat shock factor protein 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010043978.10.0PREDICTED: LOW QUALITY PROTEIN: heat stress transcription factor A-8
TrEMBLA0A059D6G80.0A0A059D6G8_EUCGR; Uncharacterized protein
STRINGXP_010043978.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70452637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67970.17e-88heat shock transcription factor A8