PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC012760.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GATA
Protein Properties Length: 128aa    MW: 13805.3 Da    PI: 11.4044
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC012760.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA34.62.7e-113263435
          GATA  4 CgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                    + kTp+WR gp g +tL naCG+ yr+ ++
  EcC012760.10 32 YTSEKTPQWRTGPLGRRTLYNACGVQYRSGRQ 63
                  55678***********************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.5E-52373IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.71E-72472No hitNo description
Gene3DG3DSA:3.30.50.103.4E-82761IPR013088Zinc finger, NHR/GATA-type
PfamPF003204.1E-92963IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
RLGTSPAALN EGPGPTEVEG DRGGAKRRCT HYTSEKTPQW RTGPLGRRTL YNACGVQYRS  60
GRQVPKYRLV VSPTFLLTQQ SNSHWKAALS DSRPRNRHSR TAPSRIHSPA SEGAGPAEAE  120
GGGGGVKR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020880430.17e-26GATA transcription factor 4
SwissprotO497412e-25GATA2_ARATH; GATA transcription factor 2
TrEMBLA0A0A9GYF61e-25A0A0A9GYF6_ARUDO; GATA transcription factor
STRINGfgenesh2_kg.5__2520__AT3G60530.13e-25(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM32032666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45050.15e-28GATA transcription factor 2
Publications ? help Back to Top
  1. Jiang K,Yung V,Chiba T,Feldman LJ
    Longitudinal patterning in roots: a GATA2-auxin interaction underlies and maintains the root transition domain.
    Planta, 2018. 247(4): p. 831-843
    [PMID:29249045]