PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC013046.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 196aa    MW: 22501.2 Da    PI: 9.4637
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC013046.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding63.44.4e-201259148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +l+++++ +G ++WktIa+t g+ R++k+c++rw++yl
     EcC013046.20 12 KGAWTPEEDRKLAEVIAVHGAKRWKTIAATAGLSRCGKSCRLRWLNYL 59
                     79********************************************97 PP
2Myb_DNA-binding52.21.4e-1665110148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ T +E++l+++++k+lG++ W++Ia +++ gRt++++k++w+++l
     EcC013046.20  65 RGNITDQEEDLILRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 110
                      7999******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.924759IPR017930Myb domain
SMARTSM007172.0E-141161IPR001005SANT/Myb domain
SuperFamilySSF466891.47E-2911106IPR009057Homeodomain-like
PfamPF002497.9E-181259IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-251366IPR009057Homeodomain-like
CDDcd001678.72E-101459No hitNo description
PROSITE profilePS5129426.11460114IPR017930Myb domain
SMARTSM007179.1E-1664112IPR001005SANT/Myb domain
PfamPF002497.3E-1565110IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-2567115IPR009057Homeodomain-like
CDDcd001671.01E-969110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MEKSSAAKEY SKGAWTPEED RKLAEVIAVH GAKRWKTIAA TAGLSRCGKS CRLRWLNYLR  60
PNIKRGNITD QEEDLILRLH KLLGNRWSLI AGRLPGRTDN EIKNYWNSHL SKKIKQKEKQ  120
SEAPKREGKE AQRRRGAERV SVEVREESSS NGGEESKTSV DFDVDEFFDF SNESSLNLEW  180
VSRFLESDKG ICDERS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-2991144108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH2/EGL3/MYC146 or BHLH12/MYC1. Regulates the epidermal cell fate specification. Mediates the formation of columellae and accumulation of mucilages on seed coats. Controls the elongation of epidermal cells positively in roots but negatively in stems, leading to the promotion of primary roots elongation and repression of leaves and stems elongation, respectively. Ovoids ectopic root-hair formation, probably by inducing GL2 in roots. Controls trichome initiation and branching. {ECO:0000269|PubMed:11437443, ECO:0000269|PubMed:15361138, ECO:0000269|PubMed:15668208, ECO:0000269|PubMed:15728674}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010064041.11e-141PREDICTED: transcription factor MYB23
SwissprotQ962764e-55MYB23_ARATH; Transcription factor MYB23
TrEMBLA0A059BZC11e-140A0A059BZC1_EUCGR; Uncharacterized protein
TrEMBLA0A1P8PFB01e-140A0A1P8PFB0_EUCGU; R2R3-MYB transcription factor MYB88
STRINGXP_010064041.11e-141(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40330.12e-52myb domain protein 23
Publications ? help Back to Top
  1. Khosla A, et al.
    HD-Zip Proteins GL2 and HDG11 Have Redundant Functions in Arabidopsis Trichomes, and GL2 Activates a Positive Feedback Loop via MYB23.
    Plant Cell, 2014. 26(5): p. 2184-2200
    [PMID:24824485]
  2. Yu D, et al.
    RPN1a, a subunit of the 26S proteasome, controls trichome development in Arabidopsis.
    Plant Physiol. Biochem., 2015. 88: p. 82-8
    [PMID:25676129]
  3. Lung SC, et al.
    Arabidopsis ACYL-COA-BINDING PROTEIN1 interacts with STEROL C4-METHYL OXIDASE1-2 to modulate gene expression of homeodomain-leucine zipper IV transcription factors.
    New Phytol., 2018. 218(1): p. 183-200
    [PMID:29288621]
  4. Kohanová J, et al.
    Root hair abundance impacts cadmium accumulation in Arabidopsis thaliana shoots.
    Ann. Bot., 2018. 122(5): p. 903-914
    [PMID:29394308]