PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC013314.30

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

NAC

Protein Properties

Length: 242aa MW: 27216.6 Da PI: 6.936

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC013314.30	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	131.1	7.8e-41	5	136	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 p GfrF Pt+eel+++yL+++++g + ++++vi+ ++i+++ePw+Lp+ +++++++w+fF++ ++++a+g r++r++++gyWkatg+ ++ EcC013314.30 5 PTGFRFYPTEEELISFYLHNQLHGLQqDKIHRVIPVLHIFDTEPWNLPQlageLCREDREQWFFFAPMQEREARGGRPSRSMTTGYWKATGSPGYIY 101 89*******************9985666778***********656654445677****************9999********* PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 s++++++g+kk++vfy g+apkg+kt+W +++yr+ EcC013314.30 102 SSDNKVIGMKKSMVFYVGKAPKGRKTQWKLNQYRA 136 *******************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.66E-44	3	167	IPR003441	NAC domain
PROSITE profile	PS51005	44.011	4	168	IPR003441	NAC domain
Pfam	PF02365	1.0E-19	5	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0015074	Biological Process	DNA integration
GO:0000166	Molecular Function	nucleotide binding
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence Send to blast
MEEYPTGFRF YPTEEELISF YLHNQLHGLQ QDKIHRVIPV LHIFDTEPWN LPQLAGELCR 60 EDREQWFFFA PMQEREARGG RPSRSMTTGY WKATGSPGYI YSSDNKVIGM KKSMVFYVGK 120 APKGRKTQWK LNQYRAIELS PTNSNSSSSN ISITKLKREL TLCRVYVVSG MSRAFDRRPL 180 EAVVGETTIQ GGGCAASSGG IGRGSGDISS SGVVAADVGS SNQWETASLE EPTWDWDQLD 240 WL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-32	5	166	18	163	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-32	5	166	18	163	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-32	5	166	18	163	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-32	5	166	18	163	NO APICAL MERISTEM PROTEIN
3swm_A	3e-32	5	166	21	166	NAC domain-containing protein 19
3swm_B	3e-32	5	166	21	166	NAC domain-containing protein 19
3swm_C	3e-32	5	166	21	166	NAC domain-containing protein 19
3swm_D	3e-32	5	166	21	166	NAC domain-containing protein 19
3swp_A	3e-32	5	166	21	166	NAC domain-containing protein 19
3swp_B	3e-32	5	166	21	166	NAC domain-containing protein 19
3swp_C	3e-32	5	166	21	166	NAC domain-containing protein 19
3swp_D	3e-32	5	166	21	166	NAC domain-containing protein 19
4dul_A	3e-32	5	166	18	163	NAC domain-containing protein 19
4dul_B	3e-32	5	166	18	163	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010034219.1	1e-153	PREDICTED: NAC domain-containing protein 90
Swissprot	Q9FMR3	7e-88	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A059ABX1	1e-151	A0A059ABX1_EUCGR; Uncharacterized protein
STRING	XP_010034219.1	1e-152	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	2e-84	NAC domain containing protein 90

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]