 |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | EcC013332.10 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
|
||||||||
| Family | LBD | ||||||||
| Protein Properties | Length: 140aa MW: 15225.6 Da PI: 9.1422 | ||||||||
| Description | LBD family protein | ||||||||
| Gene Model |
|
||||||||
| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | DUF260 | 115.1 | 4.6e-36 | 42 | 132 | 1 | 90 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90
+C aCk+lrrkC ++C++apyf ++q ++kfa+vh +FGasnv+kll ++p ++r+da+ +++yeA+ar+ dPvyG+v++il+lqqq+++
EcC013332.10 42 PCGACKFLRRKCIHGCIFAPYFGSDQgAAKFAAVHMVFGASNVSKLLLHIPVNRRQDAVVTITYEAQARLADPVYGCVSTILALQQQVHKN 132
7***********************9989***********************************************************9875 PP
| |||||||
| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50891 | 20.666 | 41 | 140 | IPR004883 | Lateral organ boundaries, LOB |
| Pfam | PF03195 | 4.2E-36 | 42 | 132 | IPR004883 | Lateral organ boundaries, LOB |
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 140 aa Download sequence Send to blast |
MDRMQGDGMS GDRRRGRSTA RRAIPPGELP AEEMTAPPPG APCGACKFLR RKCIHGCIFA 60 PYFGSDQGAA KFAAVHMVFG ASNVSKLLLH IPVNRRQDAV VTITYEAQAR LADPVYGCVS 120 TILALQQQVH KNTDFCAKYC |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 5ly0_A | 2e-37 | 35 | 131 | 4 | 99 | LOB family transfactor Ramosa2.1 |
| 5ly0_B | 2e-37 | 35 | 131 | 4 | 99 | LOB family transfactor Ramosa2.1 |
| Search in ModeBase | ||||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_010036253.1 | 1e-74 | PREDICTED: LOB domain-containing protein 20 | ||||
| Swissprot | Q9SRV3 | 8e-54 | LBD20_ARATH; LOB domain-containing protein 20 | ||||
| TrEMBL | A0A059A0U5 | 1e-63 | A0A059A0U5_EUCGR; Uncharacterized protein | ||||
| STRING | XP_010036253.1 | 5e-74 | (Eucalyptus grandis) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM108 | 28 | 359 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G03760.1 | 7e-51 | LOB domain-containing protein 20 | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
Supported By
|