PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC013663.30

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

FAR1

Protein Properties

Length: 186aa MW: 20777.3 Da PI: 5.7864

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC013663.30	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	95.6	5.8e-30	86	173	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA++vGF +r+sk ++s+r+g+ + r fvC+keg+r ++k++ k r+raetr+gC+a++ v+k+++gkw+vtk+++eH+H+l+p EcC013663.30 86 FYNTYATRVGFIIRVSKLSRSRRDGSAIGRAFVCNKEGYRMPDKRE--KIVRQRAETRVGCRAMILVRKMNTGKWVVTKFVKEHTHTLSP 173 9***************************************9988..9************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.7E-27	86	173	IPR004330	FAR1 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006979	Biological Process	response to oxidative stress
GO:0008284	Biological Process	positive regulation of cell proliferation
GO:0009737	Biological Process	response to abscisic acid
GO:0010928	Biological Process	regulation of auxin mediated signaling pathway
GO:0031538	Biological Process	negative regulation of anthocyanin metabolic process
GO:0035265	Biological Process	organ growth
GO:0043609	Biological Process	regulation of carbon utilization
GO:0071329	Biological Process	cellular response to sucrose stimulus
GO:2000024	Biological Process	regulation of leaf development
GO:0033588	Cellular Component	Elongator holoenzyme complex

Sequence ? help Back to Top
Protein Sequence Length: 186 aa Download sequence Send to blast
MVGDFGRDGT VSSVGAESSS QAVDENEVGV SAVEGEYEQV VEVKMNDDPL DRDDILDTMP 60 PVSMPSADDE PYVGQEFDSE AAAHGFYNTY ATRVGFIIRV SKLSRSRRDG SAIGRAFVCN 120 KEGYRMPDKR EKIVRQRAET RVGCRAMILV RKMNTGKWVV TKFVKEHTHT LSPGKGRRDC 180 IYDQYP

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010045402.1	1e-137	PREDICTED: protein FAR1-RELATED SEQUENCE 5
Swissprot	Q9SZL8	7e-26	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A2K1ZTL4	2e-88	A0A2K1ZTL4_POPTR; Uncharacterized protein
STRING	XP_010045402.1	1e-136	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	2e-73	FAR1 family protein

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]