PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC013666.20

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

NF-YC

Protein Properties

Length: 242aa MW: 26764.6 Da PI: 4.8821

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC013666.20	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	173.3	2.6e-54	22	123	4	102
NF-YC 4 sfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivp 97 +fw+ q ie+a+dfknh+lPlarikki+kadedv+misaeaPvl++kacelfilelt+rswlhaeenkrrtl+k+diaaa+trtdifdflvdivp EcC013666.20 22 MFWSIQrqeIEQANDFKNHQLPLARIKKIMKADEDVRMISAEAPVLFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVP 118 7999877789************************************************************************************* PP NF-YC 98 rdelk 102 rdelk EcC013666.20 119 RDELK 123 975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	8.05E-33	26	113	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	2.9E-37	33	105	IPR009072	Histone-fold
Pfam	PF00808	8.7E-21	41	104	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010411	Biological Process	xyloglucan metabolic process
GO:0042546	Biological Process	cell wall biogenesis
GO:0005618	Cellular Component	cell wall
GO:0048046	Cellular Component	apoplast
GO:0004553	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0016762	Molecular Function	xyloglucan:xyloglucosyl transferase activity
GO:0016788	Molecular Function	hydrolase activity, acting on ester bonds
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence Send to blast
MDNAQQQPQP NSYPPPPPPQ AMFWSIQRQE IEQANDFKNH QLPLARIKKI MKADEDVRMI 60 SAEAPVLFAK ACELFILELT IRSWLHAEEN KRRTLQKNDI AAAITRTDIF DFLVDIVPRD 120 ELKDEAAGLG AAAAMVGPPA SGVPYYYPPM GQPAAPGMMI GRPALDPAGG VYVQQPPPPS 180 QAWQSVWQTA APDDGAYGKP GDLDGPGYVS NDRYLVASIV FLHDFSRFLF RLVQFSSAGW 240 MV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	2e-54	27	119	3	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	91	97	RRTLQKN

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010037409.1	1e-126	PREDICTED: nuclear transcription factor Y subunit C-1 isoform X2
Swissprot	Q9SMP0	4e-99	NFYC1_ARATH; Nuclear transcription factor Y subunit C-1
TrEMBL	A0A059A6X6	1e-125	A0A059A6X6_EUCGR; Uncharacterized protein
STRING	XP_010037408.1	1e-125	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48590.1	5e-70	nuclear factor Y, subunit C1

Publications ? help Back to Top
Shi H,Chan ZL AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway. Plant Signal Behav, 2015. [PMID:24831307] Shi H,Chan ZL AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway. Plant Signal Behav, 2014. 9(7): p. e29109 [PMID:25763489] Tang Y, et al. Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation. Mol Plant, 2017. 10(2): p. 260-273 [PMID:27876642] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]