PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC013670.30

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

NAC

Protein Properties

Length: 194aa MW: 22658.3 Da PI: 5.1346

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC013670.30	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	98.8	8.1e-31	6	133	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 G+rF+Pt+eel++++L +kv g + ++ +++e+ d y ++PwdLp+ +v ++ +wyf +++ +++++r +r+t+sg Wk t + e+ EcC013670.30 6 GGYRFSPTEEELINDHLMRKVLGYTDHC--IVPELeDFYAWDPWDLPRvhqeisNVPSDGWDWYFLCPSPYLAQNSERIKRKTSSGNWKITSQRDEI 100 59*********************888..566666*******5355443333355599******************************** PP NAM 93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ ++ l+g k++L+fy ++ +kt W++hey+l EcC013670.30 101 KTRdTRVLIGSKRILTFY----KNRVKTGWILHEYHL 133 9956667*******....344799******8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	36.035	4	157	IPR003441	NAC domain
SuperFamily	SSF101941	8.89E-35	5	157	IPR003441	NAC domain
Pfam	PF02365	6.8E-20	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence Send to blast
MEPFQGGYRF SPTEEELIND HLMRKVLGYT DHCIVPELED FYAWDPWDLP RVHQEISNVP 60 SDGWDWYFLC PSPYLAQNSE RIKRKTSSGN WKITSQRDEI KTRDTRVLIG SKRILTFYKN 120 RVKTGWILHE YHLNHKLLDG YSSTLQIPYV LCRLKRKPGE SFDISPSFEG GESSVTDDTP 180 IAAEHESTED TDQE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-18	7	157	20	165	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-18	7	157	20	165	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-18	7	157	20	165	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-18	7	157	20	165	NO APICAL MERISTEM PROTEIN
3swm_A	3e-18	7	157	23	168	NAC domain-containing protein 19
3swm_B	3e-18	7	157	23	168	NAC domain-containing protein 19
3swm_C	3e-18	7	157	23	168	NAC domain-containing protein 19
3swm_D	3e-18	7	157	23	168	NAC domain-containing protein 19
3swp_A	3e-18	7	157	23	168	NAC domain-containing protein 19
3swp_B	3e-18	7	157	23	168	NAC domain-containing protein 19
3swp_C	3e-18	7	157	23	168	NAC domain-containing protein 19
3swp_D	3e-18	7	157	23	168	NAC domain-containing protein 19
4dul_A	3e-18	7	157	20	165	NAC domain-containing protein 19
4dul_B	3e-18	7	157	20	165	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010026029.1	3e-84	PREDICTED: protein NTM1-like 9
TrEMBL	A0A059BFB2	1e-131	A0A059BFB2_EUCGR; Uncharacterized protein
STRING	XP_010068654.1	1e-138	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35580.3	7e-34	NAC transcription factor-like 9