PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC014449.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 369aa    MW: 42025.9 Da    PI: 9.4145
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC014449.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.85.1e-1859104147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ede+l ++v+q+G  +W++Ia++++ gR++k+c++rw++ 
     EcC014449.10  59 RGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQ-GRSGKSCRLRWFNQ 104
                      899*****************************.***********996 PP
2Myb_DNA-binding59.19.9e-19111154146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r ++T+eE+e+l+ a++ +G++ W++Iar ++ gRt++ +k++w+ 
     EcC014449.10 111 RRPFTEEEEERLLAAHRVHGNK-WALIARLFP-GRTDNAVKNHWHV 154
                      679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.37254105IPR017930Myb domain
SuperFamilySSF466891.2E-2958152IPR009057Homeodomain-like
SMARTSM007178.4E-1558107IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-2760112IPR009057Homeodomain-like
PfamPF139212.9E-1762122No hitNo description
CDDcd001674.28E-1462103No hitNo description
PROSITE profilePS5129428.249106160IPR017930Myb domain
SMARTSM007176.4E-16110158IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-21113159IPR009057Homeodomain-like
CDDcd001671.81E-7122153No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006468Biological Processprotein phosphorylation
GO:0006886Biological Processintracellular protein transport
GO:0007264Biological Processsmall GTPase mediated signal transduction
GO:0055114Biological Processoxidation-reduction process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003723Molecular FunctionRNA binding
GO:0004004Molecular FunctionATP-dependent RNA helicase activity
GO:0004499Molecular FunctionN,N-dimethylaniline monooxygenase activity
GO:0004672Molecular Functionprotein kinase activity
GO:0005515Molecular Functionprotein binding
GO:0005524Molecular FunctionATP binding
GO:0005525Molecular FunctionGTP binding
GO:0016597Molecular Functionamino acid binding
GO:0016624Molecular Functionoxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
GO:0050660Molecular Functionflavin adenine dinucleotide binding
GO:0050661Molecular FunctionNADP binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MIIHIFHFLY ILLITKPGIY FDLASDVEEF PFGHAIMDSS GRANSGSGDD GKSAAACPRG  60
HWRPAEDEKL RQLVEQYGAQ NWNSIAEKLQ GRSGKSCRLR WFNQLDPRIN RRPFTEEEEE  120
RLLAAHRVHG NKWALIARLF PGRTDNAVKN HWHVIMARKQ REQSKLCGKR IHQEYSLGDP  180
TGLQGRKTHF QDELLGSQFR FDQGKGFFIF QSPSKERNFA LPSSSSASWT FGSQSLAKSA  240
HNSSSVDDLN RIERRDYYNR ASNNYSGREG SRSLSQPFHS HPYSSLSSAY SISQYQRVVP  300
SPFGYVCLGD GCNDSNTMKK QEIVSFHDEM PRLEKTRLHV NSTHQEQADK SLKHKDVPFI  360
DFLGVGISS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-32591597107B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010062174.10.0PREDICTED: transcription factor MYB35
TrEMBLA0A059BTH10.0A0A059BTH1_EUCGR; Uncharacterized protein
STRINGXP_010062174.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.19e-63myb domain protein 52