PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC014474.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

MYB_related

Protein Properties

Length: 79aa MW: 9284.5 Da PI: 10.3212

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC014474.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.7	2.4e-17	2	45	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++W+ eEd++l++ +k++G++ W+ Ia++++ gRt++ +k++w+ EcC014474.10 2 KDSWSVEEDKILIQSHKEMGTR-WAEIAKRLP-GRTENTIKNHWNA 45 679*****************.*****.*********95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	4.2E-16	1	49	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	23.601	1	51	IPR017930	Myb domain
Pfam	PF00249	3.5E-16	2	45	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.72E-16	2	54	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.1E-19	4	45	IPR009057	Homeodomain-like
CDD	cd00167	1.11E-12	4	47	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006352	Biological Process	DNA-templated transcription, initiation
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 79 aa Download sequence Send to blast
QKDSWSVEED KILIQSHKEM GTRWAEIAKR LPGRTENTIK NHWNAVKRRQ YCKQELLPHT 60 NSSNILQNYI RSVTTPSPP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1idy_A	5e-19	1	50	4	53	MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 3
1idz_A	5e-19	1	50	4	53	MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 3
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that recognizes the motif 5'-TAACGG-3' in the promoter of endosperm-induced genes (PubMed:27681170, PubMed:25194028, PubMed:19066902). Promotes vegetative-to-embryonic transition and the formation of somatic embryos from root explants in a WUS-independent manner but via the expression of embryonic genes (e.g. LEC1, LEC2, FUS3 and WUS) (PubMed:18695688). May play an important role during embryogenesis and seed maturation (PubMed:19066902, PubMed:25194028). Together with MYB115, activates the transcription of S-ACP-DES2/AAD2 and S-ACP-DES3/AAD3 thus promoting the biosynthesis of omega-7 monounsaturated fatty acid in seed endosperm (PubMed:27681170). Regulates negatively maturation genes in the endosperm (PubMed:25194028). {ECO:0000269\|PubMed:18695688, ECO:0000269\|PubMed:19066902, ECO:0000269\|PubMed:25194028, ECO:0000269\|PubMed:27681170}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by LEC2. {ECO:0000269\|PubMed:25194028}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010041992.1	7e-40	PREDICTED: myb-like protein AA, partial
Refseq	XP_018717996.1	3e-39	PREDICTED: transcriptional activator Myb-like
Swissprot	Q9LVW4	3e-26	MY118_ARATH; Transcription factor MYB118
TrEMBL	A0A1Q3BIZ1	3e-26	A0A1Q3BIZ1_CEPFO; Myb_DNA-bind_6 domain-containing protein
STRING	XP_010030739.1	9e-39	(Eucalyptus grandis)
STRING	XP_010041992.1	3e-39	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27785.1	1e-28	myb domain protein 118

Publications ? help Back to Top
Troncoso-Ponce MA, et al. Transcriptional Activation of Two Delta-9 Palmitoyl-ACP Desaturase Genes by MYB115 and MYB118 Is Critical for Biosynthesis of Omega-7 Monounsaturated Fatty Acids in the Endosperm of Arabidopsis Seeds. Plant Cell, 2016. 28(10): p. 2666-2682 [PMID:27681170] Ettaki H, et al. Overexpression of MYB115, AAD2, or AAD3 in Arabidopsis thaliana seeds yields contrasting omega-7 contents. PLoS ONE, 2018. 13(1): p. e0192156 [PMID:29381741]