PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC014511.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ERF
Protein Properties Length: 228aa    MW: 25651.9 Da    PI: 6.94
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC014511.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.51.9e-1994143355
           AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                   y+GVr+++ +g+++AeIrd + ng   r++lg+f+tae Aa a+++a+ +l+g
  EcC014511.10  94 YRGVRRRP-WGKYAAEIRDSTRNG--NRVWLGTFDTAEAAALAYDQAAFALRG 143
                   9*******.**********44465..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003804.4E-3793157IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.5E-3193152IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-2393152IPR016177DNA-binding domain
PROSITE profilePS5103223.4293151IPR001471AP2/ERF domain
PRINTSPR003678.5E-1194105IPR001471AP2/ERF domain
CDDcd000182.96E-2194151No hitNo description
PfamPF008471.2E-1394143IPR001471AP2/ERF domain
PRINTSPR003678.5E-11117133IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0009873Biological Processethylene-activated signaling pathway
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MESHLSHDQK PKLPSPPNSF IAPQSFSWEE LLFSHNSLPF NLNDSQDRLL LEVIAQGTVK  60
ESCESESASS TGVGEEEVTS SLAMEKLKSK RKTYRGVRRR PWGKYAAEIR DSTRNGNRVW  120
LGTFDTAEAA ALAYDQAAFA LRGSLAVLNF PLEKVRDSLK GMEYTCVGGC SPVEALKRRH  180
SMRKRLLVKK DQEKDEETRK QNLVVLEDLG PEYLEQLLSS SNSSDTIW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-28941531574Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00374DAPTransfer from AT3G23240Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010039189.11e-167PREDICTED: ethylene-responsive transcription factor 1B-like
SwissprotA0A3Q7I5Y95e-68ERFC3_SOLLC; Ethylene-response factor C3
TrEMBLA0A2R6PP941e-89A0A2R6PP94_ACTCH; Ethylene-responsive transcription factor 1B like
STRINGXP_010039189.11e-167(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22752876
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.12e-54ethylene response factor 1
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Pirrello J, et al.
    Functional analysis and binding affinity of tomato ethylene response factors provide insight on the molecular bases of plant differential responses to ethylene.
    BMC Plant Biol., 2012. 12: p. 190
    [PMID:23057995]
  3. Du M, et al.
    MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato.
    Plant Cell, 2017. 29(8): p. 1883-1906
    [PMID:28733419]