PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC014537.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

NAC

Protein Properties

Length: 206aa MW: 23525.5 Da PI: 7.5306

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC014537.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	103	3.9e-32	2	99	34	128
NAM 34 ikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyr 127 i+e+di+++ePw+Lp+ ++ ++ke++fF++ ++k++++k++ r+tk+gyWk tgk+++++s+ ++e +g++ktLvfy+gr pkg++t+Wv hey+ EcC014537.10 2 IPEIDICEFEPWQLPAmfYHRFNSKELFFFCRVKRKHSNSKHSDRTTKAGYWKVTGKERAIMSEdTDEPIGIRKTLVFYTGRVPKGKRTNWVSHEYQ 98 89***********6233344778**********************************967788*************************9 PP NAM 128 l 128 l EcC014537.10 99 L 99 8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	37.205	1	122	IPR003441	NAC domain
SuperFamily	SSF101941	5.49E-33	2	122	IPR003441	NAC domain
Pfam	PF02365	4.5E-12	12	99	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0015074	Biological Process	DNA integration
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 206 aa Download sequence Send to blast
MIPEIDICEF EPWQLPAMFY HRFNSKELFF FCRVKRKHSN SKHSDRTTKA GYWKVTGKER 60 AIMSEDTDEP IGIRKTLVFY TGRVPKGKRT NWVSHEYQLN LKCLGHNEDE MLPYVACRIK 120 NKKEKKLMMG HAPTVSPEVY SSSPHAPTVS PEVCSSSPHA YASNVSETPV NQEGDYSSFC 180 NSPSDEVADN QEAVDAQQMR NLSINT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	9e-26	1	123	48	166	NO APICAL MERISTEM PROTEIN
1ut4_B	9e-26	1	123	48	166	NO APICAL MERISTEM PROTEIN
1ut7_A	9e-26	1	123	48	166	NO APICAL MERISTEM PROTEIN
1ut7_B	9e-26	1	123	48	166	NO APICAL MERISTEM PROTEIN
3swm_A	1e-25	1	123	51	169	NAC domain-containing protein 19
3swm_B	1e-25	1	123	51	169	NAC domain-containing protein 19
3swm_C	1e-25	1	123	51	169	NAC domain-containing protein 19
3swm_D	1e-25	1	123	51	169	NAC domain-containing protein 19
3swp_A	1e-25	1	123	51	169	NAC domain-containing protein 19
3swp_B	1e-25	1	123	51	169	NAC domain-containing protein 19
3swp_C	1e-25	1	123	51	169	NAC domain-containing protein 19
3swp_D	1e-25	1	123	51	169	NAC domain-containing protein 19
4dul_A	9e-26	1	123	48	166	NAC domain-containing protein 19
4dul_B	9e-26	1	123	48	166	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010064990.1	1e-130	PREDICTED: protein NTM1-like 9
TrEMBL	A0A059DCT8	1e-128	A0A059DCT8_EUCGR; Uncharacterized protein
STRING	XP_010064990.1	1e-130	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35580.1	4e-39	NAC transcription factor-like 9