PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC014570.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 169aa    MW: 19389.3 Da    PI: 9.1383
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC014570.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.51.1e-178831899
                  --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
            B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                  +pkkf++++g++   s  + l+ +sg+ Wev+l   ++ ++++l++GW +Fvk   ++ g f+vF+++g s f  +v +f+k
  EcC014570.10  8 IPKKFVRKYGSN--LSDLVFLQVLSGQAWEVEL--VRRTDGVWLRRGWPDFVKHYAIEHGHFLVFRYEGGSAF--RVVIFDK 83
                  9********988..888999999**********..99999****************************99999..9999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086314.029184IPR003340B3 DNA binding domain
SMARTSM010195.0E-8184IPR003340B3 DNA binding domain
SuperFamilySSF1019361.96E-20784IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.4E-21784IPR015300DNA-binding pseudobarrel domain
PfamPF023625.4E-15783IPR003340B3 DNA binding domain
CDDcd100174.73E-16882No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MLIMHQGIPK KFVRKYGSNL SDLVFLQVLS GQAWEVELVR RTDGVWLRRG WPDFVKHYAI  60
EHGHFLVFRY EGGSAFRVVI FDKSASEIKY PIITELPKRE ENEGDTLVEV VQANIVCDVN  120
AGLNSSCWKR ERPFRGGEKS EALKRAASFQ SPNPFFLTLM QPSLIHHSL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010041490.11e-71PREDICTED: B3 domain-containing protein At3g18960
TrEMBLA0A059AZI71e-105A0A059AZI7_EUCGR; Uncharacterized protein
STRINGXP_010026401.12e-99(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15912578
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49475.13e-23B3 family protein