PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC014643.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 340aa    MW: 37986.9 Da    PI: 5.5132
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC014643.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.61.5e-051581943155
                   ...............TTS-STCHHHHHHHHHHHHHHH CS
           HLH  31 s............kapskKlsKaeiLekAveYIksLq 55 
                                +a++   +Ka++L +A+eY+ksLq
  EcC014643.10 158 GnqmpppraqfakSAQQNNTDKASMLDEAIEYLKSLQ 194
                   15555555667767777789****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.52E-4150198No hitNo description
Gene3DG3DSA:4.10.280.102.4E-5152200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-6173222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0055114Biological Processoxidation-reduction process
GO:0005516Molecular Functioncalmodulin binding
GO:0016491Molecular Functionoxidoreductase activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MNPCLPDWNF EYDLPLTNQK KNIGSDQELV ELLWQNGQVV MHSQNHRKPS SNQHESSQLP  60
KQDQPIMKGS GSYGNSSNLI QDDETVSWIH YPVEDSFERE FCSNFFDELP VPHPMEIDKA  120
VRQVEAEKIV KSASFNDAHN TSNQQSTIKR ALVPEISGNQ MPPPRAQFAK SAQQNNTDKA  180
SMLDEAIEYL KSLQLQLQVM WMGGGMAPMM FPGVQHYMSS MGMTMCPPPM PTVSNNLHLP  240
QVPVVDQSIP MAPNPNQSVI CQTPVLNPMN FQNQMQSPSF PEQFARYMGM HHMQATSQPM  300
NMFKFGPQTV QQIQTNPLPG SVSGQYSGGA TNDALSGKMG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010054152.11e-123PREDICTED: transcription factor PIF5
TrEMBLA0A059DHB11e-125A0A059DHB1_EUCGR; Uncharacterized protein
STRINGXP_010054152.11e-123(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43010.24e-16phytochrome interacting factor 4