PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC014793.30

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

WRKY

Protein Properties

Length: 231aa MW: 25274.7 Da PI: 7.5538

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC014793.30	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	108.4	3.5e-34	55	113	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Cts+gCpv+k+ver+++d ++v++tYeg+Hnh+ EcC014793.30 55 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSPGCPVRKHVERASHDLRAVITTYEGKHNHD 113 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.5E-38	40	115	IPR003657	WRKY domain
SuperFamily	SSF118290	5.62E-30	47	115	IPR003657	WRKY domain
PROSITE profile	PS50811	38.721	50	115	IPR003657	WRKY domain
SMART	SM00774	2.5E-39	55	114	IPR003657	WRKY domain
Pfam	PF03106	2.0E-26	56	113	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0006812	Biological Process	cation transport
GO:0055085	Biological Process	transmembrane transport
GO:0016021	Cellular Component	integral component of membrane
GO:0000166	Molecular Function	nucleotide binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0015299	Molecular Function	solute:proton antiporter activity
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
GSQKSKSAGD EFDEDQPDPK RWKQEVENEG ILAPGSRTVR EPRVVVQTTS DIDILDDGYR 60 WRKYGQKVVK GNPNPRSYYK CTSPGCPVRK HVERASHDLR AVITTYEGKH NHDVPAARGS 120 GGANRPLPMP DNGNGNNGLA DSIRSSALTN HSNNNGPSAP SSNYRVSSSE GQASPFMLEM 180 LQSPGSFGFS GLGSSLGSFL NQSPNTDNLF SRAKEEPRDD MFLESLLCRN Y

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	4e-40	46	116	8	78	Probable WRKY transcription factor 4
2lex_A	4e-40	46	116	8	78	Probable WRKY transcription factor 4
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	16	23	PDPKRWKQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010045395.1	1e-169	PREDICTED: probable WRKY transcription factor 26 isoform X1
Refseq	XP_010045396.1	1e-169	PREDICTED: probable WRKY transcription factor 26 isoform X1
TrEMBL	A0A059DA09	1e-167	A0A059DA09_EUCGR; Uncharacterized protein
STRING	XP_010045395.1	1e-168	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38470.1	1e-60	WRKY DNA-binding protein 33