PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC015072.40

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

FAR1

Protein Properties

Length: 498aa MW: 58758 Da PI: 7.7058

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC015072.40	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	65.9	1.1e-20	35	119	3	91
FAR1 3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 Y +YA + GF vrk ++ k+ r+geit+rtf C++eg++ +++++ +++ +r+e r++C a++k k + ++++ev++ ++eHnH+++p EcC015072.40 35 YVAYAIRKGFGVRKGHTVKN-RKGEITRRTFLCNCEGYSVTSSDQ--EKKFERPEVRCECPAQIKFKVD-NDVYEVIEYVSEHNHAFVP 119 99************9999.7788**********999877..9999*************9.9************9975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.1E-18	35	119	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	8.4E-32	240	334	IPR018289	MULE transposase domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0055114	Biological Process	oxidation-reduction process
GO:0005506	Molecular Function	iron ion binding
GO:0016705	Molecular Function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037	Molecular Function	heme binding

Sequence ? help Back to Top
Protein Sequence Length: 498 aa Download sequence Send to blast
HETSHLAHVM RDMENDFEFA IGMVFSNEVE AYHKYVAYAI RKGFGVRKGH TVKNRKGEIT 60 RRTFLCNCEG YSVTSSDQEK KFERPEVRCE CPAQIKFKVD NDVYEVIEYV SEHNHAFVPE 120 DQKHLIRCGR MISDTCKGVL SGMMKVGIGK TMAYKFLANE AGGSKNLGFI LRDCQKFLQT 180 ESNKIMEGGD CQQLLNHFHR MHMQNPMFFY AVQVDQQGRL TNLFWRDSLS KFDYDCFGDV 240 LVFDSTYRTN RYSLICVSFV GVNHHWKNTL FGCAFLLDET AESFIWFFNV LLESMRNKAP 300 KTIFINQDQA MAKAIRAVFP NTQHRLCTWH IIQNAIKNIP QLYQKPHFRD KYFFRLMYKC 360 KSDDEFEYIW MEMEEEWDTQ NNNWLQRLYG LRHKWSSAFD HDIFSCGIRS SQRSESTNNV 420 FQHISKKTSS LIKFVYYYEE QLKHMREIEI QDDYRSRGKL KLQVSSNALL EHAAAVYTHT 480 IFQKFFEEIM ECLSVDVS

Sequence ? help Back to Top

Protein Sequence Length: 498 aa Download sequence Send to blast

HETSHLAHVM RDMENDFEFA IGMVFSNEVE AYHKYVAYAI RKGFGVRKGH TVKNRKGEIT  60
RRTFLCNCEG YSVTSSDQEK KFERPEVRCE CPAQIKFKVD NDVYEVIEYV SEHNHAFVPE  120
DQKHLIRCGR MISDTCKGVL SGMMKVGIGK TMAYKFLANE AGGSKNLGFI LRDCQKFLQT  180
ESNKIMEGGD CQQLLNHFHR MHMQNPMFFY AVQVDQQGRL TNLFWRDSLS KFDYDCFGDV  240
LVFDSTYRTN RYSLICVSFV GVNHHWKNTL FGCAFLLDET AESFIWFFNV LLESMRNKAP  300
KTIFINQDQA MAKAIRAVFP NTQHRLCTWH IIQNAIKNIP QLYQKPHFRD KYFFRLMYKC  360
KSDDEFEYIW MEMEEEWDTQ NNNWLQRLYG LRHKWSSAFD HDIFSCGIRS SQRSESTNNV  420
FQHISKKTSS LIKFVYYYEE QLKHMREIEI QDDYRSRGKL KLQVSSNALL EHAAAVYTHT  480
IFQKFFEEIM ECLSVDVS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018721416.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X3
TrEMBL	A0A059CXY9	0.0	A0A059CXY9_EUCGR; Uncharacterized protein
STRING	XP_010027018.1	0.0	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-85	FAR1-related sequence 5