PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC015427.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family M-type_MADS
Protein Properties Length: 87aa    MW: 9606.14 Da    PI: 10.9931
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC015427.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF49.93.9e-161349541
                  SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS
        SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41
                  n + r + + kR++g++KKA E SvLC+++ +v++f 
  EcC015427.10 13 NARARRIAYEKRKKGLMKKAREFSVLCGVDTCVVVFP 49
                  78899******************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554551.01E-17182IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.862148IPR002100Transcription factor, MADS-box
SMARTSM004321.4E-11167IPR002100Transcription factor, MADS-box
CDDcd002664.91E-17282No hitNo description
PRINTSPR004046.2E-7323IPR002100Transcription factor, MADS-box
PfamPF003194.0E-161350IPR002100Transcription factor, MADS-box
PRINTSPR004046.2E-72338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 87 aa     Download sequence    Send to blast
MGRGKTPHGL VPNARARRIA YEKRKKGLMK KAREFSVLCG VDTCVVVFPE AAAAGGDRPT  60
APEVWPPDSG EARRIIERYR SAGRKEK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11425RARRIAYEKRKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010023474.14e-56PREDICTED: MADS-box transcription factor 4
TrEMBLA0A059B0V59e-55A0A059B0V5_EUCGR; Uncharacterized protein
STRINGXP_010023474.11e-55(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59481947
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.13e-19M-type_MADS family protein