PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC015428.40
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 322aa    MW: 36464.5 Da    PI: 5.2351
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC015428.40genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.83e-11198241654
                   HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
           HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                    ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  EcC015428.40 198 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILCDTIDYMKEL 241
                   589*********************66......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.281192241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.15E-15195256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.2E-9198241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-10198247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-14199251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.45E-4199245No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MELCGHGYLE DLFLAHQERN PPWVANVAPM ELNELFSSDW NYDFFDDYRI PSPSSHFPNY  60
CSSQESLLSP PTHHPDQNIF SELPQYPLSI ESLAHELLDS PISPPQIASS SYSPCDDAPL  120
FPVQERTLPL SVMTEEGEAT FLHADGFKQT IGMQGDCKPE SMESPNNQVP VFSAAGPSVG  180
AKNNRARKKS GGQPSKNLMA ERRRRKRLND RLSMLRSIVP KISKMDRTSI LCDTIDYMKE  240
LLQKINHLQH DSQFGPYHLN IMDIIEDMKP NEMLVRNTPK FNVERRDVET RIEICCATKP  300
GLLLSMVSKL DALGLDMQEC VI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1186206RKKSGGQPSKNLMAERRRRKR
2200207ERRRRKRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010060133.10.0PREDICTED: transcription factor bHLH61 isoform X1
SwissprotQ9LSL14e-50BH093_ARATH; Transcription factor bHLH93
TrEMBLA0A059BKD70.0A0A059BKD7_EUCGR; Uncharacterized protein
STRINGXP_010060133.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20432878
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.13e-52beta HLH protein 93
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  4. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]