PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC015434.30

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

LBD

Protein Properties

Length: 101aa MW: 11389.7 Da PI: 6.3829

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC015434.30	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	50.6	5.5e-16	3	55	47	99
DUF260 47 kalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +++p + r +a++++ yeA ar++dPvyG+vg+i++lqqq+ q ++e+ ++k EcC015434.30 3 QQVPGHLRAEAAECISYEATARVQDPVYGCVGIITQLQQQITQIHSEIMKIKG 55 6789999****************************************988775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	10.401	1	57	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.1E-13	3	53	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005768	Cellular Component	endosome
GO:0005802	Cellular Component	trans-Golgi network

Sequence ? help Back to Top
Protein Sequence Length: 101 aa Download sequence Send to blast
MEQQVPGHLR AEAAECISYE ATARVQDPVY GCVGIITQLQ QQITQIHSEI MKIKGEMVAH 60 RSAHPQHLPS PQPQGEPSWF SSTHRQEQDN FQSDKHLSGN F

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018719836.1	4e-69	PREDICTED: LOB domain-containing protein 23-like
TrEMBL	A0A059AKP7	1e-67	A0A059AKP7_EUCGR; Uncharacterized protein
STRING	Aquca_018_00023.1	1e-18	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26660.1	3e-11	LOB domain-containing protein 24