PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC015685.30
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ERF
Protein Properties Length: 159aa    MW: 17331.4 Da    PI: 5.1812
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC015685.30genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.21.7e-172069255
           AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                   ykG+r +k +g+WvAeIr+p   +kr r++lg++ t+  Aa+a++ a  +l+g
  EcC015685.30 20 PYKGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSTPVAAARAYDTAVFYLRG 69
                  59*****99.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.1E-302079IPR001471AP2/ERF domain
SMARTSM003801.6E-372083IPR001471AP2/ERF domain
PROSITE profilePS5103221.972077IPR001471AP2/ERF domain
PfamPF008475.3E-112169IPR001471AP2/ERF domain
SuperFamilySSF541714.71E-212179IPR016177DNA-binding domain
CDDcd000181.80E-262179No hitNo description
PRINTSPR003671.2E-112132IPR001471AP2/ERF domain
PRINTSPR003671.2E-115979IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006468Biological Processprotein phosphorylation
GO:0006508Biological Processproteolysis
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004713Molecular Functionprotein tyrosine kinase activity
GO:0005524Molecular FunctionATP binding
GO:0008234Molecular Functioncysteine-type peptidase activity
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MEGEGGGERK RGVAVERERP YKGIRMRKWG KWVAEIREPN KRSRIWLGSY STPVAAARAY  60
DTAVFYLRGP SARLNFPESV AAAAAAAEEG EAGGGDMSAD TIRKKAAEVG ARVDAALISS  120
ELKREADDKE GGDDDQFKKC VGVLERVDLN KMPEDPEDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-151178673Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010070562.13e-87PREDICTED: ethylene-responsive transcription factor ERF008
SwissprotO221741e-54ERF08_ARATH; Ethylene-responsive transcription factor ERF008
TrEMBLA0A059AZU37e-86A0A059AZU3_EUCGR; Uncharacterized protein
STRINGXP_010070562.11e-86(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23340.12e-52DREB and EAR motif protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sazegari S,Niazi A,Ahmadi FS
    A study on the regulatory network with promoter analysis for Arabidopsis DREB-genes.
    Bioinformation, 2015. 11(2): p. 101-6
    [PMID:25848171]