PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC015739.30

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

NAC

Protein Properties

Length: 187aa MW: 21037.8 Da PI: 9.2029

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC015739.30	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	78.4	1.6e-24	7	83	52	128
NAM 52 kaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++++++fF++ ++++a+g r++r+t+ gyWkatg+ +v+s++++++g+kk++vfy g+ap+g+kt+W ++eyr+ EcC015739.30 7 REDKEQCFFFAPMQERQARGGRPSRSTAVGYWKATGSPCQVYSSENKVIGMKKSMVFYVGKAPTGRKTKWKLNEYRA 83 4566799********************************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	27.609	1	116	IPR003441	NAC domain
SuperFamily	SSF101941	7.85E-24	6	115	IPR003441	NAC domain
Pfam	PF02365	3.1E-10	13	82	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016485	Biological Process	protein processing
GO:0005739	Cellular Component	mitochondrion
GO:0005774	Cellular Component	vacuolar membrane
GO:0005783	Cellular Component	endoplasmic reticulum
GO:0005794	Cellular Component	Golgi apparatus
GO:0005886	Cellular Component	plasma membrane
GO:0009506	Cellular Component	plasmodesma
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 187 aa Download sequence Send to blast
LSGEMCREDK EQCFFFAPMQ ERQARGGRPS RSTAVGYWKA TGSPCQVYSS ENKVIGMKKS 60 MVFYVGKAPT GRKTKWKLNE YRAIEIISPP ASNSSTSSVP MFRLRHEFTL CRVYVVSGSS 120 RAFDRRPLKL VARETIQDGD GGGSSSGESA SPSGSVIENN VEISHFMKTI SMEKEEPIWD 180 WEQLNWF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-20	10	121	70	170	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-20	10	121	70	170	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-20	10	121	70	170	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-20	10	121	70	170	NO APICAL MERISTEM PROTEIN
3swm_A	3e-20	10	121	73	173	NAC domain-containing protein 19
3swm_B	3e-20	10	121	73	173	NAC domain-containing protein 19
3swm_C	3e-20	10	121	73	173	NAC domain-containing protein 19
3swm_D	3e-20	10	121	73	173	NAC domain-containing protein 19
3swp_A	3e-20	10	121	73	173	NAC domain-containing protein 19
3swp_B	3e-20	10	121	73	173	NAC domain-containing protein 19
3swp_C	3e-20	10	121	73	173	NAC domain-containing protein 19
3swp_D	3e-20	10	121	73	173	NAC domain-containing protein 19
4dul_A	2e-20	10	121	70	170	NAC domain-containing protein 19
4dul_B	2e-20	10	121	70	170	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010034224.1	1e-100	PREDICTED: NAC domain-containing protein 90
Swissprot	Q9FMR3	9e-59	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A059AB41	2e-99	A0A059AB41_EUCGR; Uncharacterized protein
STRING	XP_010034224.1	1e-100	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G44350.2	7e-59	NAC domain containing protein 61

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]