PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC015897.30
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MIKC_MADS
Protein Properties Length: 223aa    MW: 25535.9 Da    PI: 8.4499
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC015897.30genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.41.1e-29959151
                  S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
        SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                  krien   rqvtfskRr g+lKKA+ELS+LCdaevaviifs+tgklye+ss
  EcC015897.30  9 KRIENANSRQVTFSKRRSGLLKKAQELSILCDAEVAVIIFSNTGKLYEFSS 59
                  79***********************************************96 PP
2K-box72.21.5e-248617412100
         K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                   + +++ ++ ++ Lk+ei +Lq  q +llG+dL+ Ls+keLq+LeqqL  +l+++++kK++ lleq+e+++ +e+++  en++Lr++++e
  EcC015897.30  86 ESTKEDDKVVDTLKDEIAELQMRQLRLLGKDLNGLSIKELQHLEQQLSGALSSVKEKKEQWLLEQLERSRLQEQRAMLENETLRRQVDE 174
                   5567788889****************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004329.7E-43160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.207161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.26E-33275IPR002100Transcription factor, MADS-box
CDDcd002654.10E-44275No hitNo description
PRINTSPR004042.2E-30323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.0E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-303859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129712.66288178IPR002487Transcription factor, K-box
PfamPF014869.3E-1794172IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008168Molecular Functionmethyltransferase activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MGRGKIEIKR IENANSRQVT FSKRRSGLLK KAQELSILCD AEVAVIIFSN TGKLYEFSSS  60
GMKQILSRYN RCQDSPESTV VEYKPESTKE DDKVVDTLKD EIAELQMRQL RLLGKDLNGL  120
SIKELQHLEQ QLSGALSSVK EKKEQWLLEQ LERSRLQEQR AMLENETLRR QVDELRGFLP  180
STHQLEYNPE KRRKALNNSG SGSPDKTCNR TAENGDSDTT LYL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-22178178MEF2C
5f28_B2e-22178178MEF2C
5f28_C2e-22178178MEF2C
5f28_D2e-22178178MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010067793.11e-162PREDICTED: agamous-like MADS-box protein AGL15
SwissprotQ392951e-76AGL15_BRANA; Agamous-like MADS-box protein AGL15
TrEMBLA0A059BIZ71e-160A0A059BIZ7_EUCGR; Uncharacterized protein
STRINGXP_010067793.11e-161(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13790.12e-66AGAMOUS-like 15