PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC015947.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family SBP
Protein Properties Length: 92aa    MW: 10617.2 Da    PI: 10.3562
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC015947.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP48.32.7e-1520484977
                  EEETTT--SS--S-STTTT-------S-- CS
           SBP 49 fhelsefDeekrsCrrrLakhnerrrkkq 77
                  fhel efDe+krsCrrrLa+hnerrrk+ 
  EcC015947.20 20 FHELLEFDENKRSCRRRLAGHNERRRKNP 48
                  ***************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114112.528147IPR004333Transcription factor, SBP-box
SuperFamilySSF1036125.3E-121951IPR004333Transcription factor, SBP-box
PfamPF031107.9E-92046IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001709Biological Processcell fate determination
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0045814Biological Processnegative regulation of gene expression, epigenetic
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0035102Cellular ComponentPRC1 complex
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    Send to blast
MILVPIDVRV FIVFILGTLF HELLEFDENK RSCRRRLAGH NERRRKNPAE PHIEGSSGKA  60
GGSTQMKELV CGQVDNRGRI QENATYKHFQ IR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010035775.12e-47PREDICTED: squamosa promoter-binding protein 1
TrEMBLA0A058ZZC22e-45A0A058ZZC2_EUCGR; Uncharacterized protein
TrEMBLA0A059A0B66e-46A0A059A0B6_EUCGR; Uncharacterized protein
TrEMBLA0A059A0I24e-46A0A059A0I2_EUCGR; Uncharacterized protein
STRINGXP_010035775.17e-47(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53160.22e-14squamosa promoter binding protein-like 4