PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC015983.40

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

LBD

Protein Properties

Length: 112aa MW: 12530.8 Da PI: 4.5952

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC015983.40	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	62.5	1.1e-19	6	62	44	100
DUF260 44 kllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 ++ ++lpe++r+da+ss+vyeA+ar+rdPvyG+vg i++lqqq++ l+++lal+++e EcC015983.40 6 SIRQELPEHQRSDAVSSMVYEANARMRDPVYGCVGAISSLQQQVDVLQNQLALAQAE 62 567899**********************************************99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	11.421	1	63	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.7E-17	8	60	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 112 aa Download sequence Send to blast
MEERFSIRQE LPEHQRSDAV SSMVYEANAR MRDPVYGCVG AISSLQQQVD VLQNQLALAQ 60 AEVVHMRLQT PQFPSTSSSA IAATNNDCSH SRRSYYPLNG VEQADVEDSL WS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-18	6	64	54	112	LOB family transfactor Ramosa2.1
5ly0_B	2e-18	6	64	54	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cytokinin. {ECO:0000269\|PubMed:17485849}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018730826.1	7e-76	PREDICTED: LOB domain-containing protein 4 isoform X3
Swissprot	Q9SA51	7e-26	LBD3_ARATH; LOB domain-containing protein 3
TrEMBL	A0A059C0A2	1e-66	A0A059C0A2_EUCGR; Uncharacterized protein
STRING	XP_010064042.1	2e-67	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	3e-18	LOB domain-containing protein 4

Publications ? help Back to Top
Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469]