PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC015995.40
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 91aa    MW: 10318.6 Da    PI: 7.3658
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC015995.40genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.32.7e-0820601454
                  HHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
           HLH 14 driNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                  d+i +  ++L++l+P+ + + +s K+s + +L+++++YI+sL
  EcC015995.40 20 DQIADLVSKLQRLIPEiR-NRRSDKVSASKVLQETCNYIRSL 60
                  6899999*********77.89*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.718660IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.3E-92074IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-92077IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-52060IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 91 aa     Download sequence    Send to blast
MSSRRSRSTQ SEGGSRISDD QIADLVSKLQ RLIPEIRNRR SDKVSASKVL QETCNYIRSL  60
HREVDDLSER LSELLADSDS EQAAIIRSLL M
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010044722.12e-55PREDICTED: transcription factor PRE3
SwissprotQ9LJX14e-36PRE5_ARATH; Transcription factor PRE5
TrEMBLA0A059D8A35e-54A0A059D8A3_EUCGR; Uncharacterized protein
STRINGXP_010044722.19e-55(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28857.12e-38bHLH family protein