PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC016096.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

M-type_MADS

Protein Properties

Length: 74aa MW: 8116.45 Da PI: 11.7135

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC016096.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	51.3	1.5e-16	13	48	5	40
SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS SRF-TF 5 nksnrqvtfskRrngilKKAeELSvLCdaevaviif 40 n + r + f kR+ng++KKA E SvLC+++ +v++f EcC016096.10 13 NARARRIAFEKRKNGLMKKAREFSVLCGVDTCVVVF 48 78899*****************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	2.0E-12	1	67	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	17.689	1	48	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	3.79E-17	1	50	IPR002100	Transcription factor, MADS-box
CDD	cd00266	1.23E-18	2	72	No hit	No description
PRINTS	PR00404	5.0E-8	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.8E-17	13	49	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.0E-8	23	38	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 74 aa Download sequence Send to blast
MGRGKTPHGL VPNARARRIA FEKRKNGLMK KAREFSVLCG VDTCVVVFPR GVAVGGDRPT 60 AREVWPPDSG EARR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010026644.1	5e-42	PREDICTED: agamous-like MADS-box protein AGL82
TrEMBL	A0A059B0V5	7e-40	A0A059B0V5_EUCGR; Uncharacterized protein
TrEMBL	A0A059B264	6e-40	A0A059B264_EUCGR; Uncharacterized protein (Fragment)
STRING	XP_010026644.1	2e-41	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM70	28	415

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G55690.1	3e-14	M-type_MADS family protein