PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC016164.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 132aa    MW: 15610 Da    PI: 10.6697
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC016164.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.44.3e-151865148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W+ eEd++lv ++k++G  +W+  a+  g+ Rt+k+c++rw +yl
     EcC016164.10 18 KGAWSVEEDQKLVAYIKRYGIWNWTHMAEPAGLARTGKSCRLRWMNYL 65
                     79******************99************************97 PP
2Myb_DNA-binding54.13.6e-1772114246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g+ T+eE+e++++++  +G++ W++Ia++++ gRt++++k++w++
     EcC016164.10  72 GNITQEEEEIIINLHLVHGNR-WASIASRLP-GRTDNEIKNYWNT 114
                      678******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.9931365IPR017930Myb domain
SuperFamilySSF466897.91E-3016112IPR009057Homeodomain-like
SMARTSM007171.4E-101767IPR001005SANT/Myb domain
PfamPF002492.8E-131865IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.3E-231972IPR009057Homeodomain-like
CDDcd001676.97E-92065No hitNo description
PROSITE profilePS5129423.93166120IPR017930Myb domain
SMARTSM007171.3E-1570118IPR001005SANT/Myb domain
PfamPF002493.8E-1572114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.5E-2673119IPR009057Homeodomain-like
CDDcd001671.46E-684116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    Send to blast
MARFPRIDKS NSKKTVKKGA WSVEEDQKLV AYIKRYGIWN WTHMAEPAGL ARTGKSCRLR  60
WMNYLRPNIR HGNITQEEEE IIINLHLVHG NRWASIASRL PGRTDNEIKN YWNTRLKKRF  120
LMENLQMPTA CD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-30181207108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in salt stress response. Confers tolerance to salt stress (PubMed:22575450). Involved in distinct cellular processes in response to osmotic stress, including control of primary metabolism and negative regulation of short-term transcriptional responses to osmotic stress (PubMed:19211694). Can activate the steps necessary for aliphatic suberin synthesis and deposition of cell wall-associated suberin-like lamellae. Involved in the production of aliphatic suberin under abiotic stress conditions (PubMed:25060192). {ECO:0000269|PubMed:19211694, ECO:0000269|PubMed:22575450, ECO:0000269|PubMed:25060192}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress (PubMed:19211694, PubMed:25060192). Induced by osmotic stress (PubMed:19211694). Induced by abscisic acid (PubMed:25060192). {ECO:0000269|PubMed:19211694, ECO:0000269|PubMed:25060192}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010030536.12e-82PREDICTED: myb-related protein 308-like
RefseqXP_010054185.12e-82PREDICTED: transcription repressor MYB5
SwissprotQ9M0J55e-45MYB41_ARATH; Transcription factor MYB41
TrEMBLA0A059CB383e-80A0A059CB38_EUCGR; Uncharacterized protein
STRINGXP_010030536.18e-82(Eucalyptus grandis)
STRINGXP_010054185.18e-82(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18570.11e-42myb domain protein 51
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]