PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC016525.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB_related
Protein Properties Length: 53aa    MW: 6107.12 Da    PI: 7.3603
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC016525.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.57.2e-09434232
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmg 32
                     grW+t++++ll  av ++G+g+W+++a+++ 
     EcC016525.10  4 GRWSTWDELLLGGAVLRHGTGDWDRVASELR 34
                     8**************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF002496.4E-7436IPR001005SANT/Myb domain
SuperFamilySSF466892.26E-5441IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.3E-5437IPR009057Homeodomain-like
CDDcd001670.00353536No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 53 aa     Download sequence    Send to blast
MEMGRWSTWD ELLLGGAVLR HGTGDWDRVA SELRARIVWP CEITPKVKLY PLP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010040732.13e-26PREDICTED: uncharacterized protein LOC104429585
TrEMBLA0A2I0JYZ42e-14A0A2I0JYZ4_PUNGR; Uncharacterized protein
TrEMBLA0A392R9S02e-15A0A392R9S0_9FABA; Bromodomain-containing protein
STRINGXP_010059327.14e-26(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7607915
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44430.11e-11DNA-binding bromodomain-containing protein