PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC016693.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 173aa    MW: 19021 Da    PI: 9.8406
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC016693.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.0006194116123
                   EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                   ++C++Cg  F+    L  H+r+H
  EcC016693.10  94 HECSICGLEFPLGQALGGHMRRH 116
                   78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.76E-844116No hitNo description
PfamPF139123.5E-114670IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.0974673IPR007087Zinc finger, C2H2
SMARTSM003550.474668IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804868IPR007087Zinc finger, C2H2
PfamPF139129.5E-1193118IPR007087Zinc finger, C2H2
PROSITE profilePS501578.99594121IPR007087Zinc finger, C2H2
SMARTSM003550.1594116IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028096116IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006810Biological Processtransport
GO:0016020Cellular Componentmembrane
GO:0003677Molecular FunctionDNA binding
GO:0005215Molecular Functiontransporter activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MVKRDREDTE VEALALANCL MLLSRVGESA DSSWLNRKSR PTERMFACKT CNREFSSFQA  60
LGGHRASHKK PKLSGDLFHL GRSADSSPAK PKTHECSICG LEFPLGQALG GHMRRHRAAM  120
AERLATAEKP VPVLKKSNSK RVMCLDLNSS PTEDDLTLRL GKAAPPLVLD LVL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010043590.11e-120PREDICTED: zinc finger protein ZAT8
TrEMBLM9YYG31e-118M9YYG3_EUCGR; C2H2-type zinc finger protein 3
STRINGXP_010043590.11e-119(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.14e-31C2H2 family protein