PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC017968.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB_related
Protein Properties Length: 175aa    MW: 20385.6 Da    PI: 8.4883
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC017968.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.21.6e-07103142445
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +T++E++l+++  k+ G + W +Ia +++ gR ++++  +w 
     EcC017968.20 103 MTEQEEDLIYRMYKLVGDR-WGLIAGRIP-GRKPEEIERFWM 142
                      7****************99.*********.***********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007177.0E-799147IPR001005SANT/Myb domain
CDDcd001672.43E-6102143No hitNo description
PfamPF002491.0E-6103143IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.5E-9103142IPR009057Homeodomain-like
SuperFamilySSF466897.35E-7104142IPR009057Homeodomain-like
PROSITE profilePS500905.993104141IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MGHDGSTRSQ TLVLLYVWLD QPFPCSSYPG HRKRRCPDAT KFFIRIGLLF LFQELIKQTW  60
VWISGGGSEP RLTVAVMKLT SSQLTKIICL AEVSSVEWKF INMTEQEEDL IYRMYKLVGD  120
RWGLIAGRIP GRKPEEIERF WMMRHHELFA NTRNETENPN VIFASLQNHI TAPEN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010053801.12e-56PREDICTED: transcription factor CPC
TrEMBLA0A059CI734e-55A0A059CI73_EUCGR; Uncharacterized protein
STRINGXP_010053801.16e-56(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53200.18e-33MYB_related family protein