PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC018014.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

MYB_related

Protein Properties

Length: 269aa MW: 29256.3 Da PI: 4.8472

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC018014.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.8	1.2e-08	1	24	24	48
HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 24 WktIartmgkgRtlkqcksrwqkyl 48 W++Ia +++ gRt++++k++w+++l EcC018014.10 1 WSAIATRLP-GRTDNEIKNYWNTHL 24 *******.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.2E-7	1	33	IPR009057	Homeodomain-like
CDD	cd00167	7.76E-7	1	24	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.2E-12	1	36	IPR009057	Homeodomain-like
Pfam	PF00249	1.1E-6	1	24	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	17.34	1	28	IPR017930	Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence Send to blast
WSAIATRLPG RTDNEIKNYW NTHLKKKLIR MGFDPMTHRR RTDVFSSSLS QLIALANLSK 60 LIDSRPLDES ALTLQSDALQ LANSLQYLQG LLQPPASATA SNNNLFSQTS CITEATQGYT 120 AYDPIKEDPD LNSLLSSTAR LFSEGIASFS QPLQDNNFTA HHHLVPNYLT NTPPQVPFSF 180 QTSLNNHVDR TAATQCLSMV NGIDHCLDST DSALWGDYDD LDLLLPPSLT EASAVTDHGD 240 ARTGGSSGGS PSSSTSPWSD IFFGDLAGH

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269\|PubMed:24902892}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269\|PubMed:24902892}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010060001.1	0.0	PREDICTED: myb-related protein 330
Swissprot	Q9S9Z2	2e-31	MYB93_ARATH; Transcription factor MYB93
TrEMBL	A0A059BKY5	0.0	A0A059BKY5_EUCGR; Uncharacterized protein
STRING	XP_010060001.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM34185	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34670.1	1e-33	myb domain protein 93

Publications ? help Back to Top
Gibbs DJ,Coates JC AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis. Plant Signal Behav, 2014. 9(10): p. e970406 [PMID:25482809]