PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC018017.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 248aa    MW: 27592.9 Da    PI: 6.5155
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC018017.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.11.5e-08129169954
                   HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
           HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                    r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  EcC018017.10 129 ARLRRERISEKIRILQRLVPGG-----TKMDTASMLDEAIRYVKFL 169
                   699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.939120169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-14125182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.7E-12126175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.01E-11126174No hitNo description
Gene3DG3DSA:4.10.280.102.7E-12127182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.1E-6130169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010197Biological Processpolar nucleus fusion
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MDFNQSKFSN NFWDLGLGME DQTLHTNDQH HHQPPFTSLW PSIHLPSMHQ TTPTTSQIPS  60
SHFVNDISIG VVANQIEDKD EEPEEELGAM KEMMYKIAAM QPVDVDPTTI RKPKRRNVRI  120
SDDPQSVAAR LRRERISEKI RILQRLVPGG TKMDTASMLD EAIRYVKFLK RQIRLLQQPN  180
NQNPTPDPGA VTGSLVGGDW QGVIAPSKPP STTSSSSFEA QVGSRFGFWS NGGGGGNSCF  240
NGHEVISE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1129134RLRRER
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010027364.10.0PREDICTED: transcription factor HEC3
TrEMBLA0A059B9E71e-170A0A059B9E7_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010027364.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44492754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00120.13e-46bHLH family protein