PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC018276.30
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 128aa    MW: 14963.2 Da    PI: 10.7889
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC018276.30genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.27.8e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++l+  ++q+G  +W++ +r  g+ R++k+c++rw +yl
     EcC018276.30 14 KGPWTPEEDQILISHIHQFGHSNWRALPRQAGLLRCGKSCRLRWINYL 61
                     79******************************99************97 PP
2Myb_DNA-binding52.51.2e-1667112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T +E + ++++++ lG++ W++Ia++++ gRt++++k++w+++l
     EcC018276.30  67 RGNFTDDERDTIIQLHQVLGNR-WSAIASRLP-GRTDNEIKNFWHTHL 112
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.2E-25564IPR009057Homeodomain-like
PROSITE profilePS5129415.012961IPR017930Myb domain
SuperFamilySSF466899.71E-3110108IPR009057Homeodomain-like
SMARTSM007171.1E-131363IPR001005SANT/Myb domain
PfamPF002497.3E-161461IPR001005SANT/Myb domain
CDDcd001673.82E-111661No hitNo description
PROSITE profilePS5129424.70162116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.1E-2665115IPR009057Homeodomain-like
SMARTSM007179.0E-1666114IPR001005SANT/Myb domain
PfamPF002492.6E-1567112IPR001005SANT/Myb domain
CDDcd001673.60E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0040010Biological Processpositive regulation of growth rate
GO:0045814Biological Processnegative regulation of gene expression, epigenetic
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008198Molecular Functionferrous iron binding
GO:0032453Molecular Functionhistone demethylase activity (H3-K4 specific)
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
MARTPCCEKM GMKKGPWTPE EDQILISHIH QFGHSNWRAL PRQAGLLRCG KSCRLRWINY  60
LRPDVKRGNF TDDERDTIIQ LHQVLGNRWS AIASRLPGRT DNEIKNFWHT HLKKRVPHSL  120
PNSTPFTI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-29141167108B-MYB
1h8a_C4e-291211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that regulates freezing tolerance by affecting expression of CBF genes. {ECO:0000269|PubMed:24415840}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA), jasmonic acid (JA), salt (NaCl), ethylene and auxin (IAA) (PubMed:16463103). Down-regulated by cold treatment (PubMed:24415840). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:24415840}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010046353.11e-93PREDICTED: myb-related protein Myb4
SwissprotQ9SJX84e-71MYB14_ARATH; Transcription factor MYB14
TrEMBLA0A059D4822e-92A0A059D482_EUCGR; Uncharacterized protein
STRINGXP_010046353.14e-93(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.12e-73myb domain protein 14
Publications ? help Back to Top
  1. Chen Y, et al.
    AtMYB14 Regulates Cold Tolerance in Arabidopsis.
    Plant Mol. Biol. Rep., 2013. 31: p. 87-97
    [PMID:24415840]