PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC018596.50

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

MYB

Protein Properties

Length: 311aa MW: 35299.8 Da PI: 5.4215

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC018596.50	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.1	6.1e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd++l+++vk +G g W + a+ g++R++ +c++rw++yl EcC018596.50 14 KGAWSAEEDKILINYVKIHGEGKWGRAAQNAGLKRCARSCRLRWLNYL 61 79********************************************97 PP
2	Myb_DNA-binding	48	2.9e-15	67	119	1	47
TSSS-HHHHHHHHHHHHHTTTT.......-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.......tWktIartmgkgRtlkqcksrwqky 47 rg+ T++E++l+++++++lG++ W++Ia +++ gRt++++k++w++ EcC018596.50 67 RGNITEDEEDLIIRLHRLLGNRsvnlvilKWALIAGRLP-GRTDNEIKNYWNTT 119 7999*********************************.**********87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	21.603	9	65	IPR017930	Myb domain
SuperFamily	SSF46689	6.64E-26	11	116	IPR009057	Homeodomain-like
SMART	SM00717	4.0E-13	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	2.4E-14	14	61	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.3E-21	15	68	IPR009057	Homeodomain-like
CDD	cd00167	8.66E-11	16	61	No hit	No description
PROSITE profile	PS51294	15.967	66	124	IPR017930	Myb domain
SMART	SM00717	1.8E-12	66	122	IPR001005	SANT/Myb domain
Pfam	PF00249	1.6E-13	67	119	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.2E-21	69	123	IPR009057	Homeodomain-like
CDD	cd00167	2.42E-10	71	120	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0015074	Biological Process	DNA integration
GO:0003677	Molecular Function	DNA binding
GO:0005525	Molecular Function	GTP binding

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MVRRPYCEKQ GMNKGAWSAE EDKILINYVK IHGEGKWGRA AQNAGLKRCA RSCRLRWLNY 60 LRPGIKRGNI TEDEEDLIIR LHRLLGNRSV NLVILKWALI AGRLPGRTDN EIKNYWNTTL 120 AKKCGSFSPQ SCVRKVNHEE ETAQCRNHGS MNNFDLVNVD QPSVAGMSGI PVLPQEEKHC 180 FVDKGIGLMN NSCSIDNQGL FSSLLVGDDG DENHPSFLMN IDNDNDFIMG LPDIDSLLFP 240 GNRTMHEDNN YDIFGGYDKN NVMSSSPYDT TSDDQVVRVE TEVMHDQQPS LHVELKKLAM 300 FLDLEDEWKE P

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	6e-23	12	124	25	128	MYB TRANSFORMING PROTEIN
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010033737.1	1e-161	PREDICTED: protein ODORANT1
TrEMBL	A0A059AIH3	0.0	A0A059AIH3_EUCGR; Uncharacterized protein
STRING	XP_010034807.1	0.0	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22640.1	7e-52	myb domain protein 3