PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC018809.50
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 469aa    MW: 51586.3 Da    PI: 8.4461
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC018809.50genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.59.9e-162570148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W + Ed+ll++ vk++G + W++Ia+t++ gRt+kqc++rw ++l
     EcC018809.50 25 KGSWIKGEDDLLINSVKRYGCK-WSLIAKTFP-GRTGKQCRERWTNHL 70
                     6899999*************99.*********.************996 PP
2Myb_DNA-binding52.21.4e-1676118145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      + +WT+eE+ +l++ ++ +G++ W+ Ia+ ++ gRt++ +k++w+
     EcC018809.50  76 KVAWTAEEESILAHWHHIYGNK-WAQIAKFLP-GRTDNAIKNHWN 118
                      568*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.286119IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.605.4E-4319IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-202059IPR009057Homeodomain-like
PROSITE profilePS5129425.082074IPR017930Myb domain
SuperFamilySSF466892.52E-2822117IPR009057Homeodomain-like
SMARTSM007172.3E-132472IPR001005SANT/Myb domain
CDDcd001672.93E-112770No hitNo description
PfamPF139214.3E-162885No hitNo description
Gene3DG3DSA:1.10.10.601.3E-2860118IPR009057Homeodomain-like
SMARTSM007177.3E-1675123IPR001005SANT/Myb domain
PROSITE profilePS5129419.03675125IPR017930Myb domain
CDDcd001671.31E-1278118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006012Biological Processgalactose metabolic process
GO:0015074Biological ProcessDNA integration
GO:0003677Molecular FunctionDNA binding
GO:0003978Molecular FunctionUDP-glucose 4-epimerase activity
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
ACVPGKTDSQ CLHRWRKVLD PRLIKGSWIK GEDDLLINSV KRYGCKWSLI AKTFPGRTGK  60
QCRERWTNHL NPSVKKVAWT AEEESILAHW HHIYGNKWAQ IAKFLPGRTD NAIKNHWNCS  120
MKKRLGSWST GCIMEMSDAS SEFCSPEVKA DCLMVKLERQ SADEITSVDQ RMHLDLNRSC  180
FTGFTSEYSH GGIMESEAVN CCISRTPWHS TAGANSRGCP TANPFHVATG FSGDADSGSN  240
ISVSSLADPS SISACSTVEL TPSPVKVDLS FASQSFESPK RIRVGATNTK CGNDPGYFCS  300
TPSKSTDMDF TGADKRKNVS DMLSSALQLR DPVTLVANNG FTGVEKQCSP SRTSYYLSTP  360
PNSVSSVSVK SWSPELILRK LAMTYEHTPS IIRRRCSKNS GNASYSGSAS TPALMLSNSQ  420
EKEGGSVDFL HVERGLLLNL HNARISTAAK CLERRLEHAF DMEMDTAIL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C6e-49312536159MYB PROTO-ONCOGENE PROTEIN
1h89_C6e-49312536159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018727809.10.0PREDICTED: myb-related protein B
TrEMBLA0A059CH750.0A0A059CH75_EUCGR; Uncharacterized protein
STRINGXP_010053316.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.28e-56myb domain protein 3r-5