PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC018913.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ERF
Protein Properties Length: 169aa    MW: 19210.6 Da    PI: 8.399
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC018913.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.21.6e-1173124155
           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                   ++ykGV +++ +g ++ eIrd ++ng   r++lg++ t+++Aa  + +a  kl+g
  EcC018913.10  73 TRYKGVMRRS-WGNYAMEIRDRKKNG--VRIWLGTYETPKDAALTYSQATFKLRG 124
                   68****8666.**********77787..********************9999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.2E-673124IPR001471AP2/ERF domain
CDDcd000182.35E-1773127No hitNo description
Gene3DG3DSA:3.30.730.101.8E-2074129IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-1474127IPR016177DNA-binding domain
PROSITE profilePS5103217.14874132IPR001471AP2/ERF domain
SMARTSM003801.9E-1674135IPR001471AP2/ERF domain
PRINTSPR003671.4E-67586IPR001471AP2/ERF domain
PRINTSPR003671.4E-698114IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MESWNELPLK VDDSEDMMVY GALCNVLNSS IGRASNQELD FKVMIIDYNS IGLATEKKPQ  60
TVEHEVQALV ERTRYKGVMR RSWGNYAMEI RDRKKNGVRI WLGTYETPKD AALTYSQATF  120
KLRGSKAKAQ QPSPRWLSQV QAYQGQLNVW SVEPSSPSTS SGGEEEKER
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-1875132360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-1875132663ATERF1
3gcc_A2e-1875132663ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010068076.11e-82PREDICTED: ethylene-responsive transcription factor 2-like
TrEMBLA0A059B9S43e-55A0A059B9S4_EUCGR; Uncharacterized protein
STRINGXP_010068076.16e-82(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47220.17e-32ethylene responsive element binding factor 2