PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC019292.20

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

ZF-HD

Protein Properties

Length: 224aa MW: 23452.6 Da PI: 6.7173

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC019292.20	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	101.7	5.1e-32	60	115	3	59
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 +vrY+eClkNhA+ +Gg avDGCgEfm++ geegt +alkCaAC+CHRnFHR+e+++ EcC019292.20 60 SVRYRECLKNHAVGIGGSAVDGCGEFMAA-GEEGTFDALKCAACNCHRNFHRKETDS 115 79************************9.999******************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	2.9E-29	61	113	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	4.0E-23	62	115	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	8.7E-29	62	112	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	26.645	63	112	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3D	G3DSA:1.10.10.60	3.8E-8	190	224	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006468	Biological Process	protein phosphorylation
GO:0003677	Molecular Function	DNA binding
GO:0004672	Molecular Function	protein kinase activity
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence Send to blast
MEFDEHEDQD EEMEIPVHHH QAAPAPVGYD SLGNPGRPSG SGAVGEGGAS AAPRKSASAS 60 VRYRECLKNH AVGIGGSAVD GCGEFMAAGE EGTFDALKCA ACNCHRNFHR KETDSGDGGG 120 ALVSYHHPHH HPGQQHPQFS PYYRAAPSPA GYLHLTPPQQ QHRPLALPAA SGGGHSREEL 180 EDVSNPSSSG GGGGGGGGGS GLKKRFRTKF TPEQKEKMLG FAER

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	188	199	SGGGGGGGGGGS

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010060081.1	1e-133	PREDICTED: zinc-finger homeodomain protein 2 isoform X1
Swissprot	Q6YXH5	2e-47	ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBL	A0A059BKP6	1e-131	A0A059BKP6_EUCGR; Uncharacterized protein
STRING	XP_010060080.1	1e-132	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	9e-41	homeobox protein 22

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]