PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC019852.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 119aa    MW: 13954.2 Da    PI: 11.2125
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC019852.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.82.9e-141865148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEd++l  +++++G  +W+  ++  g+ Rt+k+c++rw +yl
     EcC019852.20 18 KGTWSAEEDQKLTAYIRRYGIWNWAHMPKPAGLARTGKSCRLRWMNYL 65
                     799*****************99************************97 PP
2Myb_DNA-binding52.11.5e-1672114246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g+ T+eE++l++++ ++lG++ W++Ia++++ gRt++++k++w++
     EcC019852.20  72 GNITKEEEDLIIKLQQLLGNK-WAAIAARLP-GRTDNEIKNYWNT 114
                      678******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.8711365IPR017930Myb domain
SuperFamilySSF466891.18E-2916112IPR009057Homeodomain-like
SMARTSM007171.6E-91767IPR001005SANT/Myb domain
PfamPF002492.4E-121865IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-221972IPR009057Homeodomain-like
CDDcd001675.65E-82065No hitNo description
PROSITE profilePS5129424.81366119IPR017930Myb domain
SMARTSM007172.2E-1570118IPR001005SANT/Myb domain
PfamPF002492.6E-1572114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.3E-2573118IPR009057Homeodomain-like
CDDcd001671.26E-1075116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 119 aa     Download sequence    Send to blast
MVGRPLRPNK SSDPTVKKGT WSAEEDQKLT AYIRRYGIWN WAHMPKPAGL ARTGKSCRLR  60
WMNYLRPNIR HGNITKEEED LIIKLQQLLG NKWAAIAARL PGRTDNEIKN YWNTRLKKR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-28141193107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cold stress response (PubMed:14675437, PubMed:20807373, PubMed:22246661). Regulates positively the expression of genes involved in reactive oxygen species (ROS) scavenging such as peroxidase and superoxide dismutase during cold stress. Transactivates a complex gene network that have major effects on stress tolerance and panicle development (PubMed:20807373). {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|PubMed:22246661}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold stress. {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|Ref.2}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010051859.14e-82PREDICTED: transcription repressor MYB5
SwissprotQ7XBH49e-47MYB4_ORYSJ; Transcription factor MYB4
TrEMBLA0A059CCL19e-81A0A059CCL1_EUCGR; Uncharacterized protein
STRINGXP_010051859.11e-81(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28110.11e-48myb domain protein 41
Publications ? help Back to Top
  1. Park MR, et al.
    Supra-optimal expression of the cold-regulated OsMyb4 transcription factor in transgenic rice changes the complexity of transcriptional network with major effects on stress tolerance and panicle development.
    Plant Cell Environ., 2010. 33(12): p. 2209-30
    [PMID:20807373]
  2. Soltész A, et al.
    The rice Osmyb4 gene enhances tolerance to frost and improves germination under unfavourable conditions in transgenic barley plants.
    J. Appl. Genet., 2012. 53(2): p. 133-43
    [PMID:22246661]