PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC021292.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 312aa    MW: 35925.4 Da    PI: 7.498
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC021292.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM116.52.7e-36111462128
           NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk........kvkaeekewyfFskrdkky.atgkrknratksgyWkatgkd 89 
                   p+G+rFhPt ee v++yLk++v g +     +i++vdiy+++P +Lp           + + +ew+fFs+   +  ++ +r +r+t sgyWk+tg d
  EcC021292.20  11 PVGYRFHPTGEEFVNHYLKRRVLGIQGGP-CIIPDVDIYQYDPGQLPDlfhdksiiGRDDQVQEWWFFSPDTPQRfQRPTRVQRSTPSGYWKKTGDD 106
                   89*********************999544.47**************95467766432223566******987655156899**************** PP

           NAM  90 kevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                   kev+++ + +++g+k+ Lvfy+gr +++ kt+Wv+h yrl
  EcC021292.20 107 KEVKARgTATVIGIKEYLVFYQGRGKEADKTNWVIHAYRL 146
                   *****9556679**************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.14E-393162IPR003441NAC domain
PROSITE profilePS5100543.0210163IPR003441NAC domain
PfamPF023651.4E-2111146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MGAMINLQDF PVGYRFHPTG EEFVNHYLKR RVLGIQGGPC IIPDVDIYQY DPGQLPDLFH  60
DKSIIGRDDQ VQEWWFFSPD TPQRFQRPTR VQRSTPSGYW KKTGDDKEVK ARGTATVIGI  120
KEYLVFYQGR GKEADKTNWV IHAYRLPADD LNRTHVLCHL KHERDEKADN STVVSERGAI  180
NLRDFELDLH RPVDEDLFPE YDQTFYSHHE HPVQMNRRAQ TTDSVHGFVS LEEKKGVVEK  240
KFNGSTVTSE KPKLHPVPGV PHRPVAPPIR PASEKSYSET EELRFRKVKQ ETAAKNVKPE  300
LLSLDETAAR AK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A7e-28914614140Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010066255.11e-148PREDICTED: NAC domain-containing protein 14
TrEMBLA0A059BDZ21e-146A0A059BDZ2_EUCGR; Uncharacterized protein
STRINGXP_010066255.11e-147(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3422822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.17e-38NAC transcription factor-like 9